clockb (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000015488 T037917_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.893 0.902
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.893 0.902
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.893 0.902
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.893 0.902
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.893 0.902
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.893 0.902
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.893 0.902
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.893 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000039609 bHLH 28 78
ENSTRUP00000039610 bHLH 26 76
ENSTRUP00000039611 bHLH 35 85

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FOXH1 Bos taurus ENSBTAG00000004761 I 0.000
FOXH1 Canis familiaris ENSCAFG00000001632 I 0.000
FOXH1 Callithrix jacchus ENSCJAG00000021407 I 0.000
FOXH1 Cavia porcellus ENSCPOG00000009899 I 0.000
ENSCSAG00000008312 Chlorocebus sabaeus ENSCSAG00000008312 I 0.000
Foxh1 Dipodomys ordii ENSDORG00000014524 I 0.000
FOXH1 Equus caballus ENSECAG00000011766 I 0.000
ENSETEG00000017630 Echinops telfairi ENSETEG00000017630 I 0.000
FOXH1 Felis catus ENSFCAG00000023802 I 0.000
FOXH1 Homo sapiens ENSG00000160973 D 0.000
FOXH1 Gorilla gorilla ENSGGOG00000016271 I 0.000
FOXH1 Loxodonta africana ENSLAFG00000030905 I 0.000
ENSMICG00000015877 Microcebus murinus ENSMICG00000015877 I 0.000
FOXH1 Myotis lucifugus ENSMLUG00000002534 I 0.000
FOXH1 Macaca mulatta ENSMMUG00000002663 I 0.000
FOXH1 Monodelphis domestica ENSMODG00000010944 I 0.000
ENSMPUG00000006130 Mustela putorius furo ENSMPUG00000006130 I 0.000
Foxh1 Mus musculus ENSMUSG00000033837 I 0.000
ENSNLEG00000010824 Nomascus leucogenys ENSNLEG00000010824 I 0.000
FOXH1 Oryctolagus cuniculus ENSOCUG00000023626 I 0.000
FOXH1 Otolemur garnettii ENSOGAG00000012998 I 0.000
ENSP00000366534-D1 Bos grunniens ENSP00000366534-D1 I 0.000
ENSPANG00000024706 Papio anubis ENSPANG00000024706 I 0.000
ENSPPYG00000018979 Pongo abelii ENSPPYG00000018979 I 0.000
FOXH1 Pan troglodytes ENSPTRG00000020706 I 0.000
FOXH1 Pteropus vampyrus ENSPVAG00000006770 I 0.000
Foxh1 Rattus norvegicus ENSRNOG00000015371 I 0.000
ENSSHAG00000008705 Sarcophilus harrisii ENSSHAG00000008705 I 0.000
FOXH1 Sus scrofa ENSSSCG00000005902 I 0.000
ENSSTOG00000010104 Ictidomys tridecemlineatus ENSSTOG00000010104 I 0.000
FOXH1 Tursiops truncatus ENSTTRG00000001949 I 0.000
Pvit_18746 Pogona vitticeps Pvit_18746 I 0.000
foxh1 Xenopus tropicalis XB-GENE-1194372 I 0.000
foxh1.L Xenopus laevis XB-GENE-1194377 I 0.000
foxh1.2.L Xenopus laevis XB-GENE-6461998 I 0.000