USF1 (Vicugna pacos)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSVPAG00000008421 T038081_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Usf1
M01732_2.00
Mus musculus
NRYCACGTGNN

NNCACGTGRYN
PBM
Weirauch et al.(2014)
pTH4376
0.914 1.000
USF1
M02792_2.00
Homo sapiens
RNCACGTGRY

RYCACGTGNY
SELEX
Jolma et al.(2013)
USF1_1
0.914 1.000
USF1
M04146_2.00
Homo sapiens
NVCACGTGVCN

NGBCACGTGBN
SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX
0.914 1.000
USF1
M08056_2.00
Homo sapiens
RGTCACRTGVB

VBCAYGTGACY
ChIP-seq
Mathelier et al.(2014)
MA0093.2
0.914 1.000
USF1
M07807_2.00
Homo sapiens
VGTCACGTGRBSVVV

BBBSVYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha
0.914 1.000
USF1
M07808_2.00
Homo sapiens
VVGTCACGTGVBSVS

SBSVBCACGTGACBB
ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha
0.914 1.000
USF1
M07809_2.00
Homo sapiens
RGTCACGTGVBSVNN

NNBSVBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha
0.914 1.000
USF1
M07810_2.00
Homo sapiens
VGTCACGTGRB

VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha
0.914 1.000
USF1
M07811_2.00
Homo sapiens
NVGTCACGTGVSSV

BSSBCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha
0.914 1.000
USF1
M08733_2.00
Homo sapiens
VGTCACGTGVBS

SVBCACGTGACB
Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A
0.914 1.000
Usf1
M08756_2.00
Mus musculus
NNGTCACGTGVBS

SVBCACGTGACNN
Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A
0.914 1.000
USF1
M09460_2.00
Homo sapiens
YCACGTGRBN

NVYCACGTGR
Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465
0.914 1.000
USF1
M09867_2.00
Homo sapiens
NNRYCACGTGRYNN

NNRYCACGTGRYNN
Transfac
Matys et al.(2006)
V$USF_01
0.914 1.000
USF1
M09868_2.00
Homo sapiens
NNRNCAYRTGNYNN

NNRNCAYRTGNYNN
Transfac
Matys et al.(2006)
V$USF_02
0.914 1.000
USF1
M09869_2.00
Homo sapiens
HCACGTGH

DCACGTGD
Transfac
Matys et al.(2006)
V$USF_C
0.914 1.000
USF1
M04147_2.00
Homo sapiens
VHCAYGTGAYN

NRTCACRTGDB
SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX
0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000007836 bHLH 200 255

Links

Other bHLH family TFs
Other Vicugna pacos TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCAN_06410 Ancylostoma caninum ANCCAN_06410 N 0.000
ANCCEY_10735 Ancylostoma ceylanicum ANCCEY_10735 N 0.000
ANCDUO_14679 Ancylostoma duodenale ANCDUO_14679 N 0.000
CBG19687 Caenorhabditis briggsae CBG19687 N 0.000
CBN07460 Caenorhabditis brenneri CBN07460 N 0.000
CJA02893 Caenorhabditis japonica CJA02893 N 0.000
CRE03166 Caenorhabditis remanei CRE03166 N 0.000
DICVIV_11664 Dictyocaulus viviparus DICVIV_11664 N 0.000
genemark-nMf.1.1.scaf00604-processed-gene-0.10 Meloidogyne floridensis genemark-nMf.1.1.scaf00604-processed-gene-0.10 N 0.000
GPLIN_000355200 Globodera pallida GPLIN_000355200 N 0.000
HCOI00506400 Haemonchus contortus HCOI00506400 N 0.000
HCOI00608900 Haemonchus contortus HCOI00608900 N 0.000
HPBE_0000407401 Heligmosomoides bakeri HPBE_0000407401 N 0.000
HPLM_0001001001 Haemonchus placei HPLM_0001001001 N 0.000
Minc00512 Meloidogyne incognita Minc00512 N 0.000
Minc02205 Meloidogyne incognita Minc02205 N 0.000
NBR_0001294901 Nippostrongylus brasiliensis NBR_0001294901 N 0.000
NECAME_16739 Necator americanus NECAME_16739 N 0.000
OESDEN_19099 Oesophagostomum dentatum OESDEN_19099 N 0.000
rps-13 Caenorhabditis elegans WBGene00004482 N 0.000
TELCIR_08212 Teladorsagia circumcincta TELCIR_08212 N 0.000
TELCIR_25960 Teladorsagia circumcincta TELCIR_25960 N 0.000