CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSXMAG00000005137
(
Xiphophorus maculatus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSXMAG00000005137
T038116_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
USF2
M04076_2.00
Homo sapiens
NVCACGTGVCN
NGBCACGTGBN
SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX
0.846
0.870
USF2
M08050_2.00
Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN
ChIP-seq
Mathelier et al.(2014)
MA0526.2
0.846
0.870
USF2
M07785_2.00
Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford
0.846
0.870
USF2
M07786_2.00
Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford
0.846
0.870
USF2
M07787_2.00
Homo sapiens
RGTCACGTGVB
VBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford
0.846
0.870
USF2
M07788_2.00
Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford
0.846
0.870
USF2
M07789_2.00
Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY
ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford
0.846
0.870
USF2
M08715_2.00
Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN
Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A
0.846
0.870
USF2
M09812_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_01
0.846
0.870
USF2
M09813_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_02
0.846
0.870
USF2
M09814_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6_01
0.846
0.870
USF2
M09815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6
0.846
0.870
USF2
M04077_2.00
Homo sapiens
VNCAYGTGACN
NGTCACRTGNB
SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX
0.846
0.870
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXMAP00000005159
bHLH
190
245
RRAQHNEVERRRRDKINNWIVQLSKTIPECNIDYTKTGQSKGGILSKACDYIKELR
Links
Other
bHLH
family TFs
Other
Xiphophorus maculatus
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy