fgenesh2_kg.3__3440__AT2G18300.2 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 fgenesh2_kg.3__3440__AT2G18300.2 T039127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G18300
M01702_2.00
Arabidopsis thaliana
NBCACGTGCNNN

NNNGCACGTGVN
PBM
Weirauch et al.(2014)
pTH7289
0.914 1.000
AT2G18300
M06729_2.00
Arabidopsis thaliana
ACTGGT

ACCAGT
Dap-seq
OMalley et al.(2016)
bHLH64_col_a
0.914 1.000
BEE2
M01708_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8094
0.914 0.960
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC

GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.864 0.840
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN

NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.864 0.820
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC

GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.864 0.820
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH

DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.852 0.800
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB

VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.852 0.800
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW

WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.852 0.760
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY

RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.852 0.760
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN

NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.851 0.800
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB

VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.851 0.800
PK05923.1
M01121_2.00
Cannabis sativa
NNNNNNN

NNNNNNN
PBM
Lambert et al.(2019)
pTH11368
0.839 0.700
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__3440__AT2G18300.2 bHLH 193 242

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

Invalid Input OrderBy

729 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action