CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G004356
(
Zea mays
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
GRMZM2G004356
T039807_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.852
0.875
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.852
0.833
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G004356_P01
bHLH
133
180
DPHSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLR
Links
Other
bHLH
family TFs
Other
Zea mays
TFs
229 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OBART03G37400
Oryza barthii
OBART03G37400
I
0.914
OB07G13990
Oryza brachyantha
OB07G13990
I
0.914
OBART07G05280
Oryza barthii
OBART07G05280
I
0.914
OGLUM07G04790
Oryza glumaepatula
OGLUM07G04790
I
0.914
OLONG_014165
Oryza longistaminata
OLONG_014165
I
0.914
LPERR07G04600
Leersia perrieri
LPERR07G04600
I
0.914
LPERR03G31640
Leersia perrieri
LPERR03G31640
I
0.914
Pavir.J00283
Panicum virgatum
Pavir.J00283
I
0.914
BRADI1G05430
Brachypodium distachyon
BRADI1G05430
I
0.914
BRADI1G55427
Brachypodium distachyon
BRADI1G55427
I
0.914
Pavir.Ba03672
Panicum virgatum
Pavir.Ba03672
I
0.914
GRMZM2G162382
Zea mays
GRMZM2G162382
I
0.914
OMERI03G34570
Oryza meridionalis
OMERI03G34570
I
0.914
OMERI05G15760
Oryza meridionalis
OMERI05G15760
I
0.914
OS03G0797600
Oryza sativa
OS03G0797600
I
0.914
ORUFI07G05060
Oryza rufipogon
ORUFI07G05060
I
0.914
Sb02g004570
Sorghum bicolor
Sb02g004570
I
0.914
Si030704m.g
Setaria italica
Si030704m.g
I
0.914
Si036929m.g
Setaria italica
Si036929m.g
I
0.914
ORGLA07G0044500
Oryza glaberrima
ORGLA07G0044500
I
0.914
ORGLA06G0244900
Oryza glaberrima
ORGLA06G0244900
I
0.914
ONIVA03G38760
Oryza nivara
ONIVA03G38760
I
0.914
ONIVA07G04020
Oryza nivara
ONIVA07G04020
I
0.914
OPUNC03G34510
Oryza punctata
OPUNC03G34510
I
0.914
OPUNC07G05040
Oryza punctata
OPUNC07G05040
I
0.914
Pavir.J03221
Panicum virgatum
Pavir.J03221
I
0.914
OGLUM03G37150
Oryza glumaepatula
OGLUM03G37150
I
0.914
BGIOSGA013729
Oryza indica
BGIOSGA013729
I
0.914
BGIOSGA025266
Oryza indica
BGIOSGA025266
I
0.914
Pavir.J04249
Panicum virgatum
Pavir.J04249
I
0.914
GSMUA_Achr9G25560_001
Musa acuminata
GSMUA_Achr9G25560_001
I
0.902
GSMUA_Achr4G21070_001
Musa acuminata
GSMUA_Achr4G21070_001
I
0.902
GSMUA_Achr5G03100_001
Musa acuminata
GSMUA_Achr5G03100_001
I
0.902
Traes_5DL_1CD573458
Triticum aestivum
Traes_5DL_1CD573458
I
0.888
Sb01g005130
Sorghum bicolor
Sb01g005130
I
0.888
F775_30957
Aegilops tauschii
F775_30957
I
0.888
Traes_5BL_DB5410008
Triticum aestivum
Traes_5BL_DB5410008
I
0.888
Eucgr.H04337
Eucalyptus grandis
Eucgr.H04337
N
0.873
gene16564-v1.0-hybrid
Fragaria vesca
gene16564-v1.0-hybrid
N
0.873
Lus10015909.g
Linum usitatissimum
Lus10015909.g
N
0.873
Lus10006587.g
Linum usitatissimum
Lus10006587.g
N
0.873
Gorai.007G277200
Gossypium raimondii
Gorai.007G277200
N
0.873
MTR_1g080890
Medicago truncatula
MTR_1g080890
N
0.873
evm.TU.supercontig_117.94
Carica papaya
evm.TU.supercontig_117.94
N
0.873
Aquca_017_00590
Aquilegia coerulea
Aquca_017_00590
N
0.873
Pm003525
Prunus mume
Pm003525
N
0.873
Cucsa.289090
Cucumis sativus
Cucsa.289090
N
0.873
29598.m000464
Ricinus communis
29598.m000464
N
0.873
cassava18573.valid.m1
Manihot esculenta
cassava18573.valid.m1
N
0.873
Cla011475
Citrullus lanatus
Cla011475
N
0.873
Ca_03755
Cicer arietinum
Ca_03755
N
0.873
TCM_026346
Theobroma cacao
TCM_026346
N
0.873
VIT_05s0020g04620
Vitis vinifera
VIT_05s0020g04620
N
0.873
VIT_14s0030g02230
Vitis vinifera
VIT_14s0030g02230
N
0.873
PRUPE_ppa008172mg
Prunus persica
PRUPE_ppa008172mg
N
0.873
PK20184.1
Cannabis sativa
PK20184.1
N
0.873
GLYMA20G36770
Glycine max
GLYMA20G36770
N
0.873
GLYMA10G30430
Glycine max
GLYMA10G30430
N
0.873
MDP0000295593
Malus domestica
MDP0000295593
N
0.873
PGSC0003DMG400013393
Solanum tuberosum
PGSC0003DMG400013393
N
0.872
PGSC0003DMG400006089
Solanum tuberosum
PGSC0003DMG400006089
N
0.872
Solyc09g083220.2
Solanum lycopersicum
Solyc09g083220.2
N
0.872
Solyc03g005350.2
Solanum lycopersicum
Solyc03g005350.2
N
0.870
fgenesh2_kg.1__235__AT1G03040.1
Arabidopsis lyrata
fgenesh2_kg.1__235__AT1G03040.1
N
0.861
Carubv10009831m.g
Capsella rubella
Carubv10009831m.g
N
0.861
chr1.CM0375.380.nc
Lotus japonicus
chr1.CM0375.380.nc
N
0.861
Ciclev10021443m.g
Citrus clementina
Ciclev10021443m.g
N
0.861
Bo01031s030
Brassica oleracea
Bo01031s030
N
0.861
Eucgr.B01487
Eucalyptus grandis
Eucgr.B01487
N
0.861
POPTR_0002s04620
Populus trichocarpa
POPTR_0002s04620
N
0.861
PK25419.1
Cannabis sativa
PK25419.1
N
0.861
GLYMA10G03690
Glycine max
GLYMA10G03690
N
0.861
Carubv10001523m.g
Capsella rubella
Carubv10001523m.g
N
0.861
Bostr.2983s0202
Boechera stricta
Bostr.2983s0202
N
0.861
UNE12
Arabidopsis lyrata
fgenesh2_kg.6__3435__AT4G02590.2
N
0.861
GLYMA02G16110
Glycine max
GLYMA02G16110
N
0.861
TCM_004217
Theobroma cacao
TCM_004217
N
0.861
AT1G03040
Arabidopsis thaliana
AT1G03040
N
0.861
Cagra.0635s0023
Capsella grandiflora
Cagra.0635s0023
N
0.861
Cagra.0897s0074
Capsella grandiflora
Cagra.0897s0074
N
0.861
Ca_12194
Cicer arietinum
Ca_12194
N
0.861
PRUPE_ppa009299mg
Prunus persica
PRUPE_ppa009299mg
N
0.861
GLYMA03G31510
Glycine max
GLYMA03G31510
N
0.861
UNE12
Arabidopsis thaliana
AT4G02590
N
0.861
VIT_07s0141g00220
Vitis vinifera
VIT_07s0141g00220
N
0.861
Ca_07790
Cicer arietinum
Ca_07790
N
0.861
Bra018539
Brassica rapa
Bra018539
N
0.861
MTR_1g070870
Medicago truncatula
MTR_1g070870
N
0.861
Gorai.001G242500
Gossypium raimondii
Gorai.001G242500
N
0.861
Bo9g005930
Brassica oleracea
Bo9g005930
N
0.861
Pm020229
Prunus mume
Pm020229
N
0.861
SapurV1A.0006s1290
Salix purpurea
SapurV1A.0006s1290
N
0.861
Gorai.007G141800
Gossypium raimondii
Gorai.007G141800
N
0.861
Bra036256
Brassica rapa
Bra036256
N
0.861
MDP0000176749
Malus domestica
MDP0000176749
N
0.861
cassava36725.valid.m1
Manihot esculenta
cassava36725.valid.m1
N
0.861
Bra033368
Brassica rapa
Bra033368
N
0.861
Bra000872
Brassica rapa
Bra000872
N
0.861
29883.m001988
Ricinus communis
29883.m001988
N
0.861
Bo5g003580
Brassica oleracea
Bo5g003580
N
0.861
Thhalv10008279m.g
Eutrema salsugineum
Thhalv10008279m.g
N
0.861
orange1.1g022649m.g
Citrus sinensis
orange1.1g022649m.g
N
0.861
Thhalv10028824m.g
Eutrema salsugineum
Thhalv10028824m.g
N
0.861
Cucsa.388780
Cucumis sativus
Cucsa.388780
N
0.861
GLYMA19G34360
Glycine max
GLYMA19G34360
N
0.861
Cla015040
Citrullus lanatus
Cla015040
N
0.861
gene08188-v1.0-hybrid
Fragaria vesca
gene08188-v1.0-hybrid
N
0.861
Bo2g100750
Brassica oleracea
Bo2g100750
N
0.861
chr5.LjT29J15.30.nc
Lotus japonicus
chr5.LjT29J15.30.nc
N
0.860
cassava22704.valid.m1
Manihot esculenta
cassava22704.valid.m1
N
0.860
Aquca_016_00200
Aquilegia coerulea
Aquca_016_00200
I
0.852
mgf014585m
Mimulus guttatus
mgf014585m
I
0.852
SapurV1A.0100s0120
Salix purpurea
SapurV1A.0100s0120
I
0.852
Pavir.Da02078
Panicum virgatum
Pavir.Da02078
I
0.852
Pavir.J04712
Panicum virgatum
Pavir.J04712
I
0.852
Pavir.Bb02117
Panicum virgatum
Pavir.Bb02117
I
0.852
e_gw1.209.40.1
Physcomitrella patens
e_gw1.209.40.1
D
0.852
e_gw1.173.38.1
Physcomitrella patens
e_gw1.173.38.1
I
0.852
mgf001459m
Mimulus guttatus
mgf001459m
I
0.852
Cucsa.350940
Cucumis sativus
Cucsa.350940
I
0.852
mgf009435m
Mimulus guttatus
mgf009435m
I
0.852
Cucsa.132830
Cucumis sativus
Cucsa.132830
I
0.852
Carubv10005248m.g
Capsella rubella
Carubv10005248m.g
I
0.852
evm.TU.contig_30708.1
Carica papaya
evm.TU.contig_30708.1
I
0.852
Thhalv10014212m.g
Eutrema salsugineum
Thhalv10014212m.g
I
0.852
Thhalv10025656m.g
Eutrema salsugineum
Thhalv10025656m.g
I
0.852
Eucgr.C02592
Eucalyptus grandis
Eucgr.C02592
I
0.852
Eucgr.C00360
Eucalyptus grandis
Eucgr.C00360
I
0.852
PK14040.1
Cannabis sativa
PK14040.1
I
0.852
gene10062-v1.0-hybrid
Fragaria vesca
gene10062-v1.0-hybrid
I
0.852
orange1.1g012156m.g
Citrus sinensis
orange1.1g012156m.g
I
0.852
SapurV1A.0347s0080
Salix purpurea
SapurV1A.0347s0080
I
0.852
MDP0000121522
Malus domestica
MDP0000121522
I
0.852
Thhalv10000220m.g
Eutrema salsugineum
Thhalv10000220m.g
I
0.852
Gorai.009G055200
Gossypium raimondii
Gorai.009G055200
I
0.852
MDP0000534784
Malus domestica
MDP0000534784
I
0.852
Pavir.Aa00205
Panicum virgatum
Pavir.Aa00205
I
0.852
Ciclev10008192m.g
Citrus clementina
Ciclev10008192m.g
I
0.852
Bostr.7867s0954
Boechera stricta
Bostr.7867s0954
I
0.852
Cagra.0380s0028
Capsella grandiflora
Cagra.0380s0028
I
0.852
Bostr.27895s0056
Boechera stricta
Bostr.27895s0056
I
0.852
Bostr.26833s0448
Boechera stricta
Bostr.26833s0448
I
0.852
chr6.CM0037.770.nc
Lotus japonicus
chr6.CM0037.770.nc
I
0.852
Cagra.2848s0086
Capsella grandiflora
Cagra.2848s0086
I
0.852
Cagra.4091s0032
Capsella grandiflora
Cagra.4091s0032
I
0.852
Carubv10028492m.g
Capsella rubella
Carubv10028492m.g
I
0.852
Ciclev10001768m.g
Citrus clementina
Ciclev10001768m.g
N
0.852
Carubv10023532m.g
Capsella rubella
Carubv10023532m.g
I
0.852
Lus10021846.g
Linum usitatissimum
Lus10021846.g
I
0.852
Pavir.Ab03158
Panicum virgatum
Pavir.Ab03158
I
0.852
Pavir.Ba01914
Panicum virgatum
Pavir.Ba01914
I
0.852
SELMODRAFT_422025
Selaginella moellendorffii
SELMODRAFT_422025
I
0.852
GLYMA17G08300
Glycine max
GLYMA17G08300
I
0.852
GRMZM2G027563
Zea mays
GRMZM2G027563
I
0.852
GRMZM2G067654
Zea mays
GRMZM2G067654
I
0.852
GLYMA15G33020
Glycine max
GLYMA15G33020
I
0.852
GLYMA09G14380
Glycine max
GLYMA09G14380
I
0.852
LRL1
Arabidopsis lyrata
fgenesh2_kg.4__341__AT2G24260.1
I
0.852
LRL2
Arabidopsis lyrata
fgenesh2_kg.7__1084__AT4G30980.1
I
0.852
GLYMA02G36380
Glycine max
GLYMA02G36380
I
0.852
GRMZM2G350165
Zea mays
GRMZM2G350165
I
0.852
GSMUA_Achr10G24090_001
Musa acuminata
GSMUA_Achr10G24090_001
I
0.852
MLOC_13438
Hordeum vulgare
MLOC_13438
I
0.852
MLOC_38567
Hordeum vulgare
MLOC_38567
I
0.852
MTR_4g131160
Medicago truncatula
MTR_4g131160
I
0.852
LPERR09G07210
Leersia perrieri
LPERR09G07210
I
0.852
LPERR02G29460
Leersia perrieri
LPERR02G29460
I
0.852
GSMUA_Achr10G30710_001
Musa acuminata
GSMUA_Achr10G30710_001
I
0.852
GSMUA_Achr4G01910_001
Musa acuminata
GSMUA_Achr4G01910_001
I
0.852
GSMUA_Achr5G16470_001
Musa acuminata
GSMUA_Achr5G16470_001
I
0.852
LRL3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001435
I
0.852
BRADI1G47350
Brachypodium distachyon
BRADI1G47350
I
0.852
Bo1g011740
Brassica oleracea
Bo1g011740
I
0.852
Bo2g028920
Brassica oleracea
Bo2g028920
I
0.852
Bo3g018990
Brassica oleracea
Bo3g018990
I
0.852
BGIOSGA029759
Oryza indica
BGIOSGA029759
I
0.852
BGIOSGA021777
Oryza indica
BGIOSGA021777
I
0.852
BHLH66
Arabidopsis thaliana
AT2G24260
I
0.852
LRL2
Arabidopsis thaliana
AT4G30980
D
0.852
BHLH82
Arabidopsis thaliana
AT5G58010
I
0.852
Bo4g154370
Brassica oleracea
Bo4g154370
I
0.852
Bo8g099910
Brassica oleracea
Bo8g099910
I
0.852
Bra011237
Brassica rapa
Bra011237
I
0.852
Bra020398
Brassica rapa
Bra020398
I
0.852
Bra032111
Brassica rapa
Bra032111
I
0.852
Bra007863
Brassica rapa
Bra007863
I
0.852
Bra006788
Brassica rapa
Bra006788
I
0.852
Bo9g133640
Brassica oleracea
Bo9g133640
I
0.852
Bra002679
Brassica rapa
Bra002679
I
0.852
cassava22165.valid.m1
Manihot esculenta
cassava22165.valid.m1
I
0.852
OB06G14990
Oryza brachyantha
OB06G14990
I
0.852
Si029708m.g
Setaria italica
Si029708m.g
I
0.852
Solyc12g010170.1
Solanum lycopersicum
Solyc12g010170.1
I
0.852
TCM_037077
Theobroma cacao
TCM_037077
I
0.852
Si017553m.g
Setaria italica
Si017553m.g
I
0.852
SELMODRAFT_444782
Selaginella moellendorffii
SELMODRAFT_444782
I
0.852
SELMODRAFT_24890
Selaginella moellendorffii
SELMODRAFT_24890
I
0.852
SELMODRAFT_24892
Selaginella moellendorffii
SELMODRAFT_24892
I
0.852
AMTR_s00065p00184910
Amborella trichopoda
AMTR_s00065p00184910
I
0.852
Traes_6AL_FD6EC5EA9
Triticum aestivum
Traes_6AL_FD6EC5EA9
I
0.852
TRIUR3_33768
Triticum urartu
TRIUR3_33768
I
0.852
Pm027715
Prunus mume
Pm027715
I
0.852
29737.m001209
Ricinus communis
29737.m001209
I
0.852
cassava22164.valid.m1
Manihot esculenta
cassava22164.valid.m1
I
0.852
Cla019007
Citrullus lanatus
Cla019007
I
0.852
Cla013823
Citrullus lanatus
Cla013823
I
0.852
VIT_11s0037g00040
Vitis vinifera
VIT_11s0037g00040
I
0.852
Ca_03340
Cicer arietinum
Ca_03340
I
0.852
Sb10g005650
Sorghum bicolor
Sb10g005650
I
0.852
Sb04g035890
Sorghum bicolor
Sb04g035890
I
0.852
ONIVA06G06250
Oryza nivara
ONIVA06G06250
I
0.852
ONIVA09G10010
Oryza nivara
ONIVA09G10010
I
0.852
ORGLA02G0311000
Oryza glaberrima
ORGLA02G0311000
I
0.852
ONIVA02G37880
Oryza nivara
ONIVA02G37880
I
0.852
OMERI02G33790
Oryza meridionalis
OMERI02G33790
I
0.852
OGLUM02G37030
Oryza glumaepatula
OGLUM02G37030
I
0.852
OGLUM06G05610
Oryza glumaepatula
OGLUM06G05610
I
0.852
OGLUM09G10750
Oryza glumaepatula
OGLUM09G10750
I
0.852
ORUFI02G37320
Oryza rufipogon
ORUFI02G37320
I
0.852
ORUFI06G05560
Oryza rufipogon
ORUFI06G05560
I
0.852
POPTR_0018s11800
Populus trichocarpa
POPTR_0018s11800
I
0.852
PRUPE_ppa005254mg
Prunus persica
PRUPE_ppa005254mg
I
0.852
Sb02g024750
Sorghum bicolor
Sb02g024750
I
0.852
PGSC0003DMG400011133
Solanum tuberosum
PGSC0003DMG400011133
I
0.852
PGSC0003DMG400007827
Solanum tuberosum
PGSC0003DMG400007827
I
0.852
OBART06G05420
Oryza barthii
OBART06G05420
I
0.852
OS06G0184000
Oryza sativa
OS06G0184000
I
0.852
Solyc07g005400.2
Solanum lycopersicum
Solyc07g005400.2
I
0.841
MDP0000606021
Malus domestica
MDP0000606021
I
0.840