GRMZM2G016039 (Zea mays)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 GRMZM2G016039 T039816_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
DISCONTINUED: This record has been withdrawn by NCBI staff. This record represented a gene that is not currently annotated by NCBI.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20225.1
M01128_2.00 		Cannabis sativa
NCACGTGVN
NBCACGTGN		 PBM
Lambert et al.(2019)
pTH11274 		0.858 0.776
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G016039_P01 bHLH 83 131
GRMZM2G016039_P02 bHLH 83 162
GRMZM2G016039_P03 bHLH 83 129

Links

Other bHLH family TFs
Other Zea mays TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I 0.914
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I 0.914
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I 0.914
Sb03g001730 Sorghum bicolor Sb03g001730 I 0.914
GRMZM2G166642 Zea mays GRMZM2G166642 I 0.914
MLOC_64390 Hordeum vulgare MLOC_64390 I 0.914
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I 0.914
BGIOSGA003013 Oryza indica BGIOSGA003013 I 0.903
OS01G0218100 Oryza sativa OS01G0218100 I 0.903
OB01G17480 Oryza brachyantha OB01G17480 I 0.903
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I 0.903
OMERI01G07330 Oryza meridionalis OMERI01G07330 I 0.903
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I 0.903
ONIVA01G09540 Oryza nivara ONIVA01G09540 I 0.903
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I 0.903
OPUNC01G07130 Oryza punctata OPUNC01G07130 I 0.903
Si002517m.g Setaria italica Si002517m.g I 0.902
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N 0.894
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N 0.893
MDP0000256492 Malus domestica MDP0000256492 N 0.893
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.888
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.888
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.885
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I 0.885
TCM_029711 Theobroma cacao TCM_029711 I 0.885
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N 0.881
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.873
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N 0.873
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.867
MDP0000249969 Malus domestica MDP0000249969 I 0.866
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N 0.866
29900.m001610 Ricinus communis 29900.m001610 I 0.864
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I 0.858
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.858
Lus10001885.g Linum usitatissimum Lus10001885.g I 0.858
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.858
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I 0.858
PK20225.1 Cannabis sativa PK20225.1 D 0.858
GSMUA_Achr10G14370_001 Musa acuminata GSMUA_Achr10G14370_001 N 0.857
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.856
Lus10013917.g Linum usitatissimum Lus10013917.g I 0.855
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.854
GSMUA_Achr7G10740_001 Musa acuminata GSMUA_Achr7G10740_001 I 0.851
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I 0.849
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I 0.849
Eucgr.K01103 Eucalyptus grandis Eucgr.K01103 N 0.849
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N 0.846
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.846
mgf022146m Mimulus guttatus mgf022146m N 0.846
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.846
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I 0.844
Cla019977 Citrullus lanatus Cla019977 I 0.843
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.843
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.842
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.842
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.842
OB03G21490 Oryza brachyantha OB03G21490 I 0.842
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.842
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.842
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.842
OBART03G11320 Oryza barthii OBART03G11320 I 0.842
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.842
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.842
OS03G0260600 Oryza sativa OS03G0260600 I 0.842
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.842
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.842
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.842
Si039730m.g Setaria italica Si039730m.g I 0.842