GRMZM2G027563 (Zea mays)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 GRMZM2G027563 T039826_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.914 0.958
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.914 0.917
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.885 0.625
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.872 0.625
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.872 0.625
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.872 0.625
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.872 0.625
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.872 0.625
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.872 0.625
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.858 0.646
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.845 0.625
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.845 0.625
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.845 0.646
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.845 0.646
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.845 0.646
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G027563_P01 bHLH 154 201
GRMZM2G027563_P02 bHLH 126 173

Links

Other bHLH family TFs
Other Zea mays TFs

674 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10007459m.g Capsella rubella Carubv10007459m.g I 0.000
Cagra.1225s0008 Capsella grandiflora Cagra.1225s0008 I 0.000
BHLH2 Arabidopsis thaliana AT1G63650 N 0.000
Cagra.2104s0007 Capsella grandiflora Cagra.2104s0007 N 0.000
Bostr.7867s0726 Boechera stricta Bostr.7867s0726 N 0.000
Bostr.29223s0199 Boechera stricta Bostr.29223s0199 N 0.000
EGL3 Arabidopsis lyrata fgenesh2_kg.2__120__AT1G63650.2 N 0.000
BHLH127 Arabidopsis thaliana AT4G28815 N 0.000
BHLH119 Arabidopsis thaliana AT4G28811 N 0.000
AT4G28800 Arabidopsis thaliana AT4G28800 N 0.000
Carubv10019965m.g Capsella rubella Carubv10019965m.g N 0.000