MTR_5g017040 (Medicago truncatula)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 MTR_5g017040 T041674_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.914 0.980
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.885 0.640
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.885 0.580
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.877 0.860
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.877 0.840
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.877 0.840
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.877 0.840
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.877 0.840
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.877 0.840
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.857 0.800
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.851 0.500
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.851 0.500
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.851 0.500
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.844 0.780
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.844 0.780
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.844 0.800
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.844 0.800
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.844 0.800
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES94672 bHLH 112 161

Links

Other bHLH family TFs
Other Medicago truncatula TFs

551 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_17212 Aegilops tauschii F775_17212 I 0.000
F775_19148 Aegilops tauschii F775_19148 I 0.000
AMTR_s00024p00225650 Amborella trichopoda AMTR_s00024p00225650 N 0.000
evm.TU.supercontig_46.144 Carica papaya evm.TU.supercontig_46.144 N 0.000
evm.TU.supercontig_126.30 Carica papaya evm.TU.supercontig_126.30 N 0.000
evm.TU.supercontig_25.115 Carica papaya evm.TU.supercontig_25.115 N 0.000
Ca_12762 Cicer arietinum Ca_12762 N 0.000
Cla012784 Citrullus lanatus Cla012784 N 0.000
Ciclev10026498m.g Citrus clementina Ciclev10026498m.g I 0.000
Ciclev10022303m.g Citrus clementina Ciclev10022303m.g N 0.000
Ciclev10009521m.g Citrus clementina Ciclev10009521m.g N 0.000
orange1.1g036591m.g Citrus sinensis orange1.1g036591m.g I 0.000
orange1.1g028922m.g Citrus sinensis orange1.1g028922m.g N 0.000
orange1.1g028843m.g Citrus sinensis orange1.1g028843m.g N 0.000
Cucsa.340790 Cucumis sativus Cucsa.340790 N 0.000
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I 0.000
Eucgr.B01964 Eucalyptus grandis Eucgr.B01964 I 0.000
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.000
Eucgr.E00407 Eucalyptus grandis Eucgr.E00407 N 0.000
Eucgr.F04422 Eucalyptus grandis Eucgr.F04422 N 0.000
Eucgr.C00725 Eucalyptus grandis Eucgr.C00725 I 0.000
Eucgr.C00722 Eucalyptus grandis Eucgr.C00722 I 0.000
Eucgr.B01869 Eucalyptus grandis Eucgr.B01869 I 0.000
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.000
gene08880-v1.0-hybrid Fragaria vesca gene08880-v1.0-hybrid N 0.000
gene07418-v1.0-hybrid Fragaria vesca gene07418-v1.0-hybrid N 0.000
gene15383-v1.0-hybrid Fragaria vesca gene15383-v1.0-hybrid N 0.000
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.000
GLYMA01G41610 Glycine max GLYMA01G41610 N 0.000
GLYMA17G15270 Glycine max GLYMA17G15270 I 0.000
GLYMA11G03770 Glycine max GLYMA11G03770 N 0.000
GLYMA05G04900 Glycine max GLYMA05G04900 I 0.000
GLYMA02G41440 Glycine max GLYMA02G41440 I 0.000
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.000
Gorai.004G196800 Gossypium raimondii Gorai.004G196800 N 0.000
Gorai.012G011700 Gossypium raimondii Gorai.012G011700 N 0.000
Gorai.010G096800 Gossypium raimondii Gorai.010G096800 N 0.000
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I 0.000
Gorai.009G146500 Gossypium raimondii Gorai.009G146500 N 0.000
Gorai.009G040900 Gossypium raimondii Gorai.009G040900 N 0.000
Gorai.009G040800 Gossypium raimondii Gorai.009G040800 N 0.000
LPERR01G23630 Leersia perrieri LPERR01G23630 I 0.000
chr2.CM0405.380.nd Lotus japonicus chr2.CM0405.380.nd I 0.000
MDP0000931057 Malus domestica MDP0000931057 N 0.000
MDP0000887107 Malus domestica MDP0000887107 I 0.000
MDP0000261265 Malus domestica MDP0000261265 I 0.000
MDP0000253904 Malus domestica MDP0000253904 N 0.000
MDP0000124555 Malus domestica MDP0000124555 N 0.000
MDP0000140609 Malus domestica MDP0000140609 I 0.000
MDP0000226215 Malus domestica MDP0000226215 N 0.000
MDP0000143276 Malus domestica MDP0000143276 I 0.000
MDP0000133817 Malus domestica MDP0000133817 I 0.000
cassava33302.m1 Manihot esculenta cassava33302.m1 I 0.000
cassava2804.m1 Manihot esculenta cassava2804.m1 N 0.000
cassava25868.m1 Manihot esculenta cassava25868.m1 I 0.000
cassava31571.valid.m1 Manihot esculenta cassava31571.valid.m1 N 0.000
cassava9944.m1 Manihot esculenta cassava9944.m1 I 0.000
MTR_4g100720 Medicago truncatula MTR_4g100720 N 0.000
MTR_5g079670 Medicago truncatula MTR_5g079670 I 0.000
mgf018735m Mimulus guttatus mgf018735m N 0.000
mgf024953m Mimulus guttatus mgf024953m N 0.000
GSMUA_Achr9G27380_001 Musa acuminata GSMUA_Achr9G27380_001 I 0.000
GSMUA_Achr3G21000_001 Musa acuminata GSMUA_Achr3G21000_001 I 0.000
GSMUA_Achr2G17960_001 Musa acuminata GSMUA_Achr2G17960_001 N 0.000
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I 0.000
GSMUA_Achr3G27700_001 Musa acuminata GSMUA_Achr3G27700_001 I 0.000
ORGLA01G0227100 Oryza glaberrima ORGLA01G0227100 I 0.000
BGIOSGA004260 Oryza indica BGIOSGA004260 I 0.000
OLONG_002608 Oryza longistaminata OLONG_002608 I 0.000
ORUFI01G30610 Oryza rufipogon ORUFI01G30610 I 0.000
OS01G0695900 Oryza sativa OS01G0695900 I 0.000
PDK_20s13009436g002 Phoenix dactylifera PDK_20s13009436g002 I 0.000
POPTR_0019s05210 Populus trichocarpa POPTR_0019s05210 I 0.000
POPTR_0019s05200 Populus trichocarpa POPTR_0019s05200 I 0.000
POPTR_0019s05190 Populus trichocarpa POPTR_0019s05190 I 0.000
POPTR_0018s08500 Populus trichocarpa POPTR_0018s08500 N 0.000
POPTR_0006s23780 Populus trichocarpa POPTR_0006s23780 I 0.000
POPTR_0003s07680 Populus trichocarpa POPTR_0003s07680 N 0.000
POPTR_0003s06320 Populus trichocarpa POPTR_0003s06320 N 0.000
POPTR_0001s16970 Populus trichocarpa POPTR_0001s16970 N 0.000
POPTR_0001s04240 Populus trichocarpa POPTR_0001s04240 I 0.000
Pm005573 Prunus mume Pm005573 I 0.000
Pm023419 Prunus mume Pm023419 N 0.000
Pm013277 Prunus mume Pm013277 N 0.000
Pm027048 Prunus mume Pm027048 I 0.000
Pm005577 Prunus mume Pm005577 I 0.000
PRUPE_ppa024533mg Prunus persica PRUPE_ppa024533mg N 0.000
PRUPE_ppa017136mg Prunus persica PRUPE_ppa017136mg I 0.000
PRUPE_ppa016135mg Prunus persica PRUPE_ppa016135mg N 0.000
PRUPE_ppa026916mg Prunus persica PRUPE_ppa026916mg I 0.000
PRUPE_ppa015883mg Prunus persica PRUPE_ppa015883mg I 0.000
28226.m000839 Ricinus communis 28226.m000839 I 0.000
SapurV1A.1360s0110 Salix purpurea SapurV1A.1360s0110 N 0.000
SapurV1A.0710s0030 Salix purpurea SapurV1A.0710s0030 I 0.000
SapurV1A.0002s0910 Salix purpurea SapurV1A.0002s0910 N 0.000
SapurV1A.0177s0330 Salix purpurea SapurV1A.0177s0330 N 0.000
SapurV1A.0177s0340 Salix purpurea SapurV1A.0177s0340 N 0.000
SapurV1A.4052s0010 Salix purpurea SapurV1A.4052s0010 N 0.000
SapurV1A.0918s0130 Salix purpurea SapurV1A.0918s0130 I 0.000
SapurV1A.1087s0090 Salix purpurea SapurV1A.1087s0090 N 0.000
SapurV1A.0435s0070 Salix purpurea SapurV1A.0435s0070 N 0.000
Si004316m.g Setaria italica Si004316m.g I 0.000
Solyc12g049300.1 Solanum lycopersicum Solyc12g049300.1 I 0.000
TCM_037383 Theobroma cacao TCM_037383 I 0.000
TCM_029126 Theobroma cacao TCM_029126 N 0.000
TCM_015933 Theobroma cacao TCM_015933 I 0.000
Traes_4DL_26A958CDD Triticum aestivum Traes_4DL_26A958CDD I 0.000
Traes_4DL_8A9D9ACCB Triticum aestivum Traes_4DL_8A9D9ACCB I 0.000
TRIUR3_09734 Triticum urartu TRIUR3_09734 I 0.000
VIT_04s0008g01870 Vitis vinifera VIT_04s0008g01870 I 0.000
VIT_09s0002g01380 Vitis vinifera VIT_09s0002g01380 N 0.000
VIT_11s0016g01300 Vitis vinifera VIT_11s0016g01300 I 0.000
VIT_00s0341g00050 Vitis vinifera VIT_00s0341g00050 N 0.000
VIT_17s0000g02650 Vitis vinifera VIT_17s0000g02650 I 0.000
GRMZM2G395672 Zea mays GRMZM2G395672 I 0.000