OB03G39890 (Oryza brachyantha)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 OB03G39890 T041991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH

DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.890 0.922
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW

WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.890 0.902
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY

RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.890 0.902
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB

VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.890 0.882
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN

NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.877 0.902
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC

GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.877 0.863
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC

GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.851 0.863
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN

NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.838 0.804
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB

VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.838 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB03G39890.1 bHLH 154 204

Links

Other bHLH family TFs
Other Oryza brachyantha TFs

665 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA000430 Oryza indica BGIOSGA000430 I 0.000
BGIOSGA019930 Oryza indica BGIOSGA019930 I 0.000
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.000
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.000
BRADI2G24120 Brachypodium distachyon BRADI2G24120 I 0.000
cassava12750.valid.m1 Manihot esculenta cassava12750.valid.m1 I 0.000
Ca_04375 Cicer arietinum Ca_04375 N 0.000
chr5.CM0052.120.nc Lotus japonicus chr5.CM0052.120.nc N 0.000
Ciclev10002059m.g Citrus clementina Ciclev10002059m.g I 0.000
Cla017970 Citrullus lanatus Cla017970 I 0.000
Cucsa.184670 Cucumis sativus Cucsa.184670 I 0.000
Cucsa.363740 Cucumis sativus Cucsa.363740 I 0.000
evm.TU.supercontig_21.207 Carica papaya evm.TU.supercontig_21.207 N 0.000
F775_25077 Aegilops tauschii F775_25077 I 0.000
F775_43558 Aegilops tauschii F775_43558 I 0.000
fgenesh2_kg.1__328__AT1G03970.1 Arabidopsis lyrata fgenesh2_kg.1__328__AT1G03970.1 N 0.000
GBF4 Arabidopsis thaliana AT1G03970 N 0.000
Gorai.005G078500 Gossypium raimondii Gorai.005G078500 N 0.000
GRMZM5G858197 Zea mays GRMZM5G858197 I 0.000
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I 0.000
LOC_Os05g36160 Oryza sativa LOC_Os05g36160 D 0.000
LPERR01G33060 Leersia perrieri LPERR01G33060 I 0.000
LPERR05G14180 Leersia perrieri LPERR05G14180 I 0.000
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.000
mgf008848m Mimulus guttatus mgf008848m N 0.000
mgf015092m Mimulus guttatus mgf015092m I 0.000
MLOC_53321 Hordeum vulgare MLOC_53321 I 0.000
MLOC_64571 Hordeum vulgare MLOC_64571 I 0.000
OB05G25740 Oryza brachyantha OB05G25740 I 0.000
OB06G16510 Oryza brachyantha OB06G16510 I 0.000
OBART01G37980 Oryza barthii OBART01G37980 I 0.000
OBART01G38510 Oryza barthii OBART01G38510 I 0.000
OBART05G17920 Oryza barthii OBART05G17920 I 0.000
OBART06G07070 Oryza barthii OBART06G07070 I 0.000
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.000
OGLUM01G42750 Oryza glumaepatula OGLUM01G42750 I 0.000
OGLUM05G18920 Oryza glumaepatula OGLUM05G18920 I 0.000
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.000
OLONG_006755 Oryza longistaminata OLONG_006755 I 0.000
OMERI01G35430 Oryza meridionalis OMERI01G35430 I 0.000
OMERI05G15500 Oryza meridionalis OMERI05G15500 I 0.000
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.000
ONIVA01G43200 Oryza nivara ONIVA01G43200 I 0.000
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.000
ONIVA05G18780 Oryza nivara ONIVA05G18780 I 0.000
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.000
OPUNC01G37310 Oryza punctata OPUNC01G37310 I 0.000
OPUNC05G15820 Oryza punctata OPUNC05G15820 I 0.000
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.000
orange1.1g025985m.g Citrus sinensis orange1.1g025985m.g I 0.000
ORGLA01G0323500 Oryza glaberrima ORGLA01G0323500 I 0.000
ORGLA05G0154900 Oryza glaberrima ORGLA05G0154900 I 0.000
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.000
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.000
ORUFI01G41890 Oryza rufipogon ORUFI01G41890 I 0.000
ORUFI05G19090 Oryza rufipogon ORUFI05G19090 I 0.000
OS01G0867300 Oryza sativa OS01G0867300 I 0.000
OS05G0437700 Oryza sativa OS05G0437700 I 0.000
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I 0.000
Pavir.J05659 Panicum virgatum Pavir.J05659 I 0.000
PK16522.1 Cannabis sativa PK16522.1 N 0.000
Sb03g040970 Sorghum bicolor Sb03g040970 I 0.000
Sb09g021580 Sorghum bicolor Sb09g021580 I 0.000
Si003247m.g Setaria italica Si003247m.g I 0.000
Solyc04g071510.2 Solanum lycopersicum Solyc04g071510.2 I 0.000
TCM_022574 Theobroma cacao TCM_022574 I 0.000
TCM_035623 Theobroma cacao TCM_035623 N 0.000
TRAES3BF019000220CFD_g Triticum aestivum TRAES3BF019000220CFD_g I 0.000
TRIUR3_19588 Triticum urartu TRIUR3_19588 I 0.000
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.000
VIT_18s0072g00470 Vitis vinifera VIT_18s0072g00470 N 0.000