OBART01G11950 (Oryza barthii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 OBART01G11950 T042076_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.901 0.980
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.901 0.959
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.901 0.959
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.901 0.959
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.901 0.959
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.901 0.959
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.877 0.857
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.872 0.633
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.872 0.592
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.868 0.857
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.868 0.857
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.868 0.857
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.868 0.837
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.855 0.816
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.855 0.816
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM

KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.840 0.673
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART01G11950.1 bHLH 386 434
OBART01G11950.2 bHLH 386 434
OBART01G11950.3 bHLH 386 434

Links

Other bHLH family TFs
Other Oryza barthii TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000006449 Ailuropoda melanoleuca ENSAMEG00000006449 I 0.000
ENSAMXG00000024858 Astyanax mexicanus ENSAMXG00000024858 I 0.000
ENSAMXG00000025568 Astyanax mexicanus ENSAMXG00000025568 I 0.000
ASCL1 Bos taurus ENSBTAG00000016227 I 0.000
ENSBTAP00000021592-D1 Bos grunniens ENSBTAP00000021592-D1 I 0.000
ASCL1 Canis familiaris ENSCAFG00000007324 I 0.000
ASCL1 Callithrix jacchus ENSCJAG00000014345 I 0.000
ASCL1 Cavia porcellus ENSCPOG00000020666 I 0.000
ENSCSAG00000018938 Chlorocebus sabaeus ENSCSAG00000018938 I 0.000
ascl1a Danio rerio ENSDARG00000038386 I 0.000
ascl1b Danio rerio ENSDARG00000101628 I 0.000
ASCL1 Dasypus novemcinctus ENSDNOG00000001616 I 0.000
ASCL1 Felis catus ENSFCAG00000008250 I 0.000
ASCL1 Homo sapiens ENSG00000139352 D 0.000
ascl1b Gasterosteus aculeatus ENSGACG00000011375 I 0.000
ascl1a Gasterosteus aculeatus ENSGACG00000020048 I 0.000
ASCL1 Gorilla gorilla ENSGGOG00000005479 I 0.000
ENSGMOG00000002268 Gadus morhua ENSGMOG00000002268 I 0.000
ENSGMOG00000009589 Gadus morhua ENSGMOG00000009589 I 0.000
ENSLACG00000010712 Latimeria chalumnae ENSLACG00000010712 I 0.000
ENSLOCG00000017318 Lepisosteus oculatus ENSLOCG00000017318 I 0.000
ENSMEUG00000010370 Macropus eugenii ENSMEUG00000010370 I 0.000
ASCL1 Macaca mulatta ENSMMUG00000005747 I 0.000
ASCL1 Monodelphis domestica ENSMODG00000002347 I 0.000
Ascl1 Mus musculus ENSMUSG00000020052 D 0.000
ENSNLEG00000006410 Nomascus leucogenys ENSNLEG00000006410 I 0.000
ASCL1 Ornithorhynchus anatinus ENSOANG00000013973 I 0.000
ENSOARG00000015879 Ovis aries ENSOARG00000015879 I 0.000
ASCL1 Oryctolagus cuniculus ENSOCUG00000006992 I 0.000
ASCL1 Otolemur garnettii ENSOGAG00000030324 I 0.000
ENSONIG00000020440 Oreochromis niloticus ENSONIG00000020440 I 0.000
ENSONIG00000021219 Oreochromis niloticus ENSONIG00000021219 I 0.000
ascl1b Oryzias latipes ENSORLG00000012117 I 0.000
ascl1a Oryzias latipes ENSORLG00000016504 I 0.000
ENSP00000266744 Macaca fascicularis ENSP00000266744 I 0.000
ENSPFOG00000018073 Poecilia formosa ENSPFOG00000018073 I 0.000
ENSPFOG00000020633 Poecilia formosa ENSPFOG00000020633 I 0.000
ENSPPYG00000004884 Pongo abelii ENSPPYG00000004884 I 0.000
ASCL1 Pteropus vampyrus ENSPVAG00000011272 I 0.000
Ascl1 Rattus norvegicus ENSRNOG00000004294 I 0.000
ENSSHAG00000011936 Sarcophilus harrisii ENSSHAG00000011936 I 0.000
ENSSTOG00000028420 Ictidomys tridecemlineatus ENSSTOG00000028420 I 0.000
ascl1b Tetraodon nigroviridis ENSTNIG00000011380 I 0.000
ascl1a Takifugu rubripes ENSTRUG00000012801 I 0.000
ASCL1 Tursiops truncatus ENSTTRG00000016243 I 0.000
ASCL1 Vicugna pacos ENSVPAG00000002018 I 0.000
ENSXMAG00000019614 Xiphophorus maculatus ENSXMAG00000019614 I 0.000
ENSXMAG00000019890 Xiphophorus maculatus ENSXMAG00000019890 I 0.000
Myotis_brandtii_ASCL1_10010089 Myotis brandtii Myotis_brandtii_ASCL1_10010089 I 0.000
Ogr07565 Ophisaurus gracilis Ogr07565 I 0.000
Ogr16040 Ophisaurus gracilis Ogr16040 I 0.000
Pvit_15764 Pogona vitticeps Pvit_15764 I 0.000
Sakowv30008499m.g Saccoglossus kowalevskii Sakowv30008499m.g I 0.000
ascl1 Xenopus tropicalis XB-GENE-1032967 I 0.000
ascl1.L Xenopus laevis XB-GENE-1032969 I 0.000
ascl1.S Xenopus laevis XB-GENE-17340658 I 0.000