CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OMERI02G22740
(
Oryza meridionalis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
OMERI02G22740
T042472_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.887
0.860
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.851
0.800
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.851
0.800
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.845
0.780
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.845
0.780
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OMERI02G22740.1
bHLH
234
283
THPRSIAERERRTRISEKLRKLQELVPNMDKQTSTADMLDLAVEHIKGLQ
Links
Other
bHLH
family TFs
Other
Oryza meridionalis
TFs
231 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ONIVA02G26110
Oryza nivara
ONIVA02G26110
I
0.914
OLONG_009256
Oryza longistaminata
OLONG_009256
I
0.914
Pavir.Ab02229
Panicum virgatum
Pavir.Ab02229
I
0.914
Si010513m.g
Setaria italica
Si010513m.g
I
0.914
OPUNC02G21170
Oryza punctata
OPUNC02G21170
I
0.914
GRMZM2G437481
Zea mays
GRMZM2G437481
I
0.914
Sb06g020810
Sorghum bicolor
Sb06g020810
I
0.914
Sb04g025260
Sorghum bicolor
Sb04g025260
I
0.914
ORUFI02G24640
Oryza rufipogon
ORUFI02G24640
I
0.914
ORGLA02G0200100
Oryza glaberrima
ORGLA02G0200100
I
0.914
Pavir.Gb01377
Panicum virgatum
Pavir.Gb01377
I
0.914
Pavir.Ga01365
Panicum virgatum
Pavir.Ga01365
I
0.914
LPERR02G18900
Leersia perrieri
LPERR02G18900
I
0.914
BGIOSGA008576
Oryza indica
BGIOSGA008576
I
0.914
Pavir.J08536
Panicum virgatum
Pavir.J08536
I
0.914
OB02G30670
Oryza brachyantha
OB02G30670
I
0.914
OBART02G23210
Oryza barthii
OBART02G23210
I
0.914
GSMUA_Achr6G21220_001
Musa acuminata
GSMUA_Achr6G21220_001
I
0.903
Pavir.Aa01423
Panicum virgatum
Pavir.Aa01423
I
0.903
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.902
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.902
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.899
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.897
SapurV1A.1898s0040
Salix purpurea
SapurV1A.1898s0040
I
0.897
PGSC0003DMG400006569
Solanum tuberosum
PGSC0003DMG400006569
I
0.894
PRUPE_ppa025178mg
Prunus persica
PRUPE_ppa025178mg
I
0.894
Cagra.3706s0004
Capsella grandiflora
Cagra.3706s0004
I
0.894
SapurV1A.0529s0060
Salix purpurea
SapurV1A.0529s0060
I
0.894
MDP0000273574
Malus domestica
MDP0000273574
I
0.894
Thhalv10016998m.g
Eutrema salsugineum
Thhalv10016998m.g
I
0.894
PK07850.1
Cannabis sativa
PK07850.1
I
0.894
chr5.LjT42F22.20.nc
Lotus japonicus
chr5.LjT42F22.20.nc
I
0.894
Gorai.011G144600
Gossypium raimondii
Gorai.011G144600
I
0.894
Carubv10023683m.g
Capsella rubella
Carubv10023683m.g
I
0.894
Pm007619
Prunus mume
Pm007619
I
0.894
VIT_05s0124g00240
Vitis vinifera
VIT_05s0124g00240
I
0.894
mgf005043m
Mimulus guttatus
mgf005043m
I
0.894
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.894
Bostr.25993s0461
Boechera stricta
Bostr.25993s0461
I
0.894
Solyc09g098110.2
Solanum lycopersicum
Solyc09g098110.2
I
0.894
TCM_020066
Theobroma cacao
TCM_020066
I
0.894
Bra004748
Brassica rapa
Bra004748
I
0.894
Bo4g019620
Brassica oleracea
Bo4g019620
I
0.894
Bra000291
Brassica rapa
Bra000291
I
0.894
Bo3g036400
Brassica oleracea
Bo3g036400
I
0.894
fgenesh2_kg.4__2475__AT2G43140.1
Arabidopsis lyrata
fgenesh2_kg.4__2475__AT2G43140.1
I
0.894
GLYMA20G39220
Glycine max
GLYMA20G39220
I
0.894
AT2G43140
Arabidopsis thaliana
AT2G43140
I
0.894
cassava35513.valid.m1
Manihot esculenta
cassava35513.valid.m1
I
0.891
30149.m000231
Ricinus communis
30149.m000231
I
0.891
Pm000447
Prunus mume
Pm000447
I
0.887
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.887
Cla017792
Citrullus lanatus
Cla017792
I
0.887
29216.m000261
Ricinus communis
29216.m000261
I
0.887
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.887
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.887
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.887
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.887
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.887
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.887
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.887
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.887
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.887
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.887
TCM_024842
Theobroma cacao
TCM_024842
I
0.887
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.887
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.887
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.887
F775_24151
Aegilops tauschii
F775_24151
I
0.887
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.887
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.887
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.887
MDP0000180376
Malus domestica
MDP0000180376
I
0.887
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.887
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.887
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.887
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.887
PK18038.1
Cannabis sativa
PK18038.1
I
0.887
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.887
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.887
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.887
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.887
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.887
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.887
mgf016734m
Mimulus guttatus
mgf016734m
I
0.887
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.887
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.887
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.887
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.887
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.887
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.887
Pm025821
Prunus mume
Pm025821
I
0.887
OBART08G19860
Oryza barthii
OBART08G19860
I
0.887
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.887
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.887
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.887
OBART09G14660
Oryza barthii
OBART09G14660
I
0.887
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.887
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.887
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.887
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.887
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.887
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.887
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.887
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.887
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.887
OB08G26810
Oryza brachyantha
OB08G26810
I
0.887
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.887
OS09G0487900
Oryza sativa
OS09G0487900
I
0.887
OS08G0506700
Oryza sativa
OS08G0506700
D
0.887
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.887
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.887
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.887
30152.m002405
Ricinus communis
30152.m002405
I
0.884
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.884
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.884
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.884
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.884
Si017194m.g
Setaria italica
Si017194m.g
I
0.884
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.884
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.875
SapurV1A.0402s0180
Salix purpurea
SapurV1A.0402s0180
I
0.873
SapurV1A.0071s0010
Salix purpurea
SapurV1A.0071s0010
I
0.873
GLYMA08G16190
Glycine max
GLYMA08G16190
I
0.867
Cucsa.050160
Cucumis sativus
Cucsa.050160
I
0.867
Cla015469
Citrullus lanatus
Cla015469
I
0.867
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.863
TCM_005925
Theobroma cacao
TCM_005925
I
0.863
chr1.CM0318.250.nd
Lotus japonicus
chr1.CM0318.250.nd
I
0.861
orange1.1g016638m.g
Citrus sinensis
orange1.1g016638m.g
I
0.858
Ciclev10031622m.g
Citrus clementina
Ciclev10031622m.g
I
0.858
gene26967-v1.0-hybrid
Fragaria vesca
gene26967-v1.0-hybrid
I
0.858
GLYMA02G29830
Glycine max
GLYMA02G29830
I
0.857
BGIOSGA016651
Oryza indica
BGIOSGA016651
I
0.856
OS04G0489600
Oryza sativa
OS04G0489600
I
0.856
ONIVA04G15000
Oryza nivara
ONIVA04G15000
I
0.856
OBART04G16900
Oryza barthii
OBART04G16900
I
0.856
LPERR04G13560
Leersia perrieri
LPERR04G13560
I
0.856
OB04G24170
Oryza brachyantha
OB04G24170
I
0.856
OPUNC04G14700
Oryza punctata
OPUNC04G14700
I
0.856
OGLUM04G16920
Oryza glumaepatula
OGLUM04G16920
I
0.856
ORUFI04G18350
Oryza rufipogon
ORUFI04G18350
I
0.856
MLOC_12058
Hordeum vulgare
MLOC_12058
I
0.856
Bra037732
Brassica rapa
Bra037732
N
0.856
BRADI3G48070
Brachypodium distachyon
BRADI3G48070
I
0.856
ORGLA04G0140000
Oryza glaberrima
ORGLA04G0140000
I
0.856
Bo4g194080
Brassica oleracea
Bo4g194080
N
0.856
OMERI04G14260
Oryza meridionalis
OMERI04G14260
I
0.856
POPTR_0001s27680
Populus trichocarpa
POPTR_0001s27680
I
0.855
Ca_26916
Cicer arietinum
Ca_26916
I
0.854
SapurV1A.0027s0090
Salix purpurea
SapurV1A.0027s0090
I
0.854
GLYMA15G42680
Glycine max
GLYMA15G42680
I
0.854
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.853
Eucgr.J00796
Eucalyptus grandis
Eucgr.J00796
I
0.851
GLYMA13G41670
Glycine max
GLYMA13G41670
I
0.851
Bra016886
Brassica rapa
Bra016886
I
0.851
Eucgr.G03396
Eucalyptus grandis
Eucgr.G03396
I
0.851
Eucgr.B03669
Eucalyptus grandis
Eucgr.B03669
I
0.851
Bo4g191390
Brassica oleracea
Bo4g191390
I
0.851
Thhalv10011463m.g
Eutrema salsugineum
Thhalv10011463m.g
I
0.851
GSMUA_Achr9G27780_001
Musa acuminata
GSMUA_Achr9G27780_001
I
0.851
PK20089.1
Cannabis sativa
PK20089.1
I
0.851
GSMUA_Achr3G11110_001
Musa acuminata
GSMUA_Achr3G11110_001
I
0.851
BHLH122
Arabidopsis thaliana
AT1G51140
D
0.851
GRMZM2G417597
Zea mays
GRMZM2G417597
I
0.851
Pavir.J14004
Panicum virgatum
Pavir.J14004
I
0.851
Pavir.J00377
Panicum virgatum
Pavir.J00377
I
0.851
MTR_2g098310
Medicago truncatula
MTR_2g098310
I
0.851
GLYMA15G03740
Glycine max
GLYMA15G03740
I
0.851
orange1.1g015337m.g
Citrus sinensis
orange1.1g015337m.g
I
0.851
Pavir.Ba01718
Panicum virgatum
Pavir.Ba01718
I
0.851
Bo6g024810
Brassica oleracea
Bo6g024810
I
0.851
Gorai.009G071900
Gossypium raimondii
Gorai.009G071900
I
0.851
Bostr.26675s0074
Boechera stricta
Bostr.26675s0074
I
0.851
GLYMA12G05930
Glycine max
GLYMA12G05930
I
0.851
Ciclev10015437m.g
Citrus clementina
Ciclev10015437m.g
I
0.851
fgenesh2_kg.1__4183__AT1G51140.1
Arabidopsis lyrata
fgenesh2_kg.1__4183__AT1G51140.1
I
0.851
GRMZM2G085467
Zea mays
GRMZM2G085467
I
0.851
TCM_040564
Theobroma cacao
TCM_040564
I
0.851
Ca_02662
Cicer arietinum
Ca_02662
I
0.851
Ca_14223
Cicer arietinum
Ca_14223
I
0.851
GLYMA11G13960
Glycine max
GLYMA11G13960
I
0.851
Cagra.2093s0006
Capsella grandiflora
Cagra.2093s0006
I
0.851
Si029614m.g
Setaria italica
Si029614m.g
I
0.851
Sb02g028300
Sorghum bicolor
Sb02g028300
I
0.851
Bra018896
Brassica rapa
Bra018896
I
0.851
Carubv10009458m.g
Capsella rubella
Carubv10009458m.g
I
0.851
mgf018372m
Mimulus guttatus
mgf018372m
N
0.849
GLYMA19G32600
Glycine max
GLYMA19G32600
I
0.849
GLYMA12G36750
Glycine max
GLYMA12G36750
I
0.846
MTR_3g028520
Medicago truncatula
MTR_3g028520
I
0.846
MTR_3g027650
Medicago truncatula
MTR_3g027650
I
0.846
GLYMA13G27455
Glycine max
GLYMA13G27455
I
0.846
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.845
TCM_036484
Theobroma cacao
TCM_036484
I
0.845
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.845
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.845
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.845
PRUPE_ppa006134mg
Prunus persica
PRUPE_ppa006134mg
I
0.845
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.845
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.845
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.845
PK06301.1
Cannabis sativa
PK06301.1
I
0.845
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.845
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.845
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.845
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.845
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.845
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.845
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.845
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.845
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.845
Bra036760
Brassica rapa
Bra036760
I
0.845
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.845
Bra028088
Brassica rapa
Bra028088
I
0.845
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.845
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.845
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.845
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.845
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.845
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.845
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.845
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.845
Pm016406
Prunus mume
Pm016406
I
0.845
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.845
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.845
mgf002701m
Mimulus guttatus
mgf002701m
I
0.845
Pm004181
Prunus mume
Pm004181
I
0.845
MDP0000269890
Malus domestica
MDP0000269890
I
0.845
e_gw1.34.393.1
Physcomitrella patens
e_gw1.34.393.1
I
0.841
cassava36544.valid.m1
Manihot esculenta
cassava36544.valid.m1
I
0.839