ONIVA03G28270 (Oryza nivara)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ONIVA03G28270 T042625_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.911 0.900
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.898 0.880
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.898 0.880
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.871 0.940
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.871 0.940
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.871 0.940
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.871 0.940
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.871 0.940
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.871 0.940
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.868 0.880
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.868 0.880
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.868 0.880
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.860 0.860
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.854 0.620
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.854 0.580
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA03G28270.1 bHLH 323 372

Links

Other bHLH family TFs
Other Oryza nivara TFs

491 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL002769 Aedes aegypti AAEL002769 N 0.000
AALB003340 Anopheles albimanus AALB003340 I 0.000
AARA009757 Anopheles arabiensis AARA009757 I 0.000
AATE019368 Anopheles atroparvus AATE019368 N 0.000
ACEP10073 Atta cephalotes ACEP10073 N 0.000
ACHR007729 Anopheles christyi ACHR007729 I 0.000
ACOC_0000703501 Angiostrongylus costaricensis ACOC_0000703501 I 0.000
ACOM033416 Anopheles coluzzii ACOM033416 N 0.000
ACUA003826 Anopheles culicifacies ACUA003826 I 0.000
ACYPI001696 Acyrthosiphon pisum ACYPI001696 I 0.000
ADIR006616 Anopheles dirus ADIR006616 I 0.000
AEPI001687 Anopheles epiroticus AEPI001687 I 0.000
AFAF012033 Anopheles farauti AFAF012033 N 0.000
AFUN011260 Anopheles funestus AFUN011260 N 0.000
AGAP004052 Anopheles gambiae AGAP004052 N 0.000
AMAM006295 Anopheles maculatus AMAM006295 I 0.000
AMEC020934 Anopheles melas AMEC020934 N 0.000
AMEM000031 Anopheles merus AMEM000031 N 0.000
AMIN002618 Anopheles minimus AMIN002618 I 0.000
ANCCAN_23624 Ancylostoma caninum ANCCAN_23624 I 0.000
ANCCAN_24706 Ancylostoma caninum ANCCAN_24706 I 0.000
ANCCEY_02877 Ancylostoma ceylanicum ANCCEY_02877 I 0.000
ANCDUO_15205 Ancylostoma duodenale ANCDUO_15205 I 0.000
ASIM_0001298301 Anisakis simplex ASIM_0001298301 I 0.000
ASTEI07078 Anopheles stephensi ASTEI07078 I 0.000
Bm5024 Brugia malayi Bm5024 I 0.000
CapteG2449 Capitella teleta CapteG2449 N 0.000
Cflo_00868--XP_392355.3_APIME Camponotus floridanus Cflo_00868--XP_392355.3_APIME I 0.000
CGOC_0000822101 Cylicostephanus goldi CGOC_0000822101 I 0.000
CJA12444 Caenorhabditis japonica CJA12444 I 0.000
CPIJ004052 Culex quinquefasciatus CPIJ004052 I 0.000
CpipJ_CPIJ004052 Culex pipiens CpipJ_CPIJ004052 I 0.000
D917_07791 Trichinella nativa D917_07791 I 0.000
D918_02805 Trichuris suis D918_02805 I 0.000
DAPPUDRAFT_290533 Daphnia pulex DAPPUDRAFT_290533 I 0.000
DICVIV_00921 Dictyocaulus viviparus DICVIV_00921 I 0.000
ECPE_0000538001 Echinostoma caproni ECPE_0000538001 N 0.000
EEL_0000266401 Elaeophora elaphi EEL_0000266401 I 0.000
EVEC_0001110501 Enterobius vermicularis EVEC_0001110501 I 0.000
GA14403 Drosophila pseudoobscura FBgn0074431 N 0.000
GF16857 Drosophila ananassae FBgn0093877 N 0.000
GH21437 Drosophila grimshawi FBgn0128899 N 0.000
GI22696 Drosophila mojavensis FBgn0145423 N 0.000
GK11290 Drosophila willistoni FBgn0213301 N 0.000
GL11998 Drosophila persimilis FBgn0149606 I 0.000
HCOI01824000 Haemonchus contortus HCOI01824000 I 0.000
HCOI02128500 Haemonchus contortus HCOI02128500 I 0.000
ISCW008733 Ixodes scapularis ISCW008733 N 0.000
L893_g28279 Steinernema glaseri L893_g28279 I 0.000
L898_g8569 Steinernema monticolum L898_g8569 I 0.000
LCUP011134 Lucilia cuprina LCUP011134 I 0.000
LOAG_14553 Loa loa LOAG_14553 I 0.000
LotgiG183824 Lottia gigantea LotgiG183824 N 0.000
MCOS_0000195601 Mesocestoides corti MCOS_0000195601 I 0.000
nAv.1.0.1.g04749 Acanthocheilonema viteae nAv.1.0.1.g04749 I 0.000
NBR_0001988501 Nippostrongylus brasiliensis NBR_0001988501 I 0.000
NECAME_07738 Necator americanus NECAME_07738 I 0.000
nLs.2.1.2.g05095 Litomosoides sigmodontis nLs.2.1.2.g05095 I 0.000
nOo.2.0.1.g10265 Onchocerca ochengi nOo.2.0.1.g10265 I 0.000
nRc.2.0.1.g47399 Romanomermis culicivorax nRc.2.0.1.g47399 N 0.000
PPAI010076 Phlebotomus papatasi PPAI010076 I 0.000
pros Drosophila virilis FBgn0028753 N 0.000
pros-1 Caenorhabditis elegans WBGene00000448 D 0.000
SBAD_0000068201 Soboliphyme baturini SBAD_0000068201 I 0.000
SINV18378 Solenopsis invicta SINV18378 I 0.000
Sjc_0122310 Schistosoma japonicum Sjc_0122310 I 0.000
SMAR007154 Strigamia maritima SMAR007154 N 0.000
Smp_162760 Schistosoma mansoni Smp_162760 N 0.000
SMRZ_0000596101 Schistosoma margrebowiei SMRZ_0000596101 I 0.000
SMTD_0001301801 Schistosoma mattheei SMTD_0001301801 I 0.000
SMU15028253 Schmidtea mediterranea SMU15028253 N 0.000
SMU15031649 Schmidtea mediterranea SMU15031649 N 0.000
SVUK_0000405601 Strongylus vulgaris SVUK_0000405601 I 0.000
T265_07444 Opisthorchis viverrini T265_07444 N 0.000
TELCIR_21732 Teladorsagia circumcincta TELCIR_21732 I 0.000
TELCIR_22329 Teladorsagia circumcincta TELCIR_22329 I 0.000
tetur02g12740 Tetranychus urticae tetur02g12740 N 0.000
TsM_000259000 Taenia solium TsM_000259000 N 0.000
WBGene00244521 Onchocerca volvulus WBGene00244521 I 0.000
WUBG_06449 Wuchereria bancrofti WUBG_06449 I 0.000
YQE_10516 Dendroctonus ponderosae YQE_10516 I 0.000