ORUFI03G34210 (Oryza rufipogon)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ORUFI03G34210 T043056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH

DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.890 0.922
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW

WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.890 0.902
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY

RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.890 0.902
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB

VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.890 0.882
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN

NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.877 0.902
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC

GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.877 0.863
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC

GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.851 0.863
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN

NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.838 0.804
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB

VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.838 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI03G34210.1 bHLH 162 212

Links

Other bHLH family TFs
Other Oryza rufipogon TFs

665 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0004_1965 Arabidopsis lyrata Al_scaffold_0004_1965 N 0.000
fgenesh1_pm.C_scaffold_1002485 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002485 N 0.000
BHLH52 Arabidopsis thaliana AT1G30670 N 0.000
BHLH53 Arabidopsis thaliana AT2G34820 N 0.000
Bostr.23794s0621 Boechera stricta Bostr.23794s0621 N 0.000
Bostr.15697s0367 Boechera stricta Bostr.15697s0367 N 0.000
Bo3g028090 Brassica oleracea Bo3g028090 N 0.000
Bo4g039270 Brassica oleracea Bo4g039270 N 0.000
Bra022993 Brassica rapa Bra022993 N 0.000
Bra005389 Brassica rapa Bra005389 N 0.000
Cagra.1508s0136 Capsella grandiflora Cagra.1508s0136 N 0.000
Carubv10011063m.g Capsella rubella Carubv10011063m.g N 0.000
Ciclev10017579m.g Citrus clementina Ciclev10017579m.g N 0.000
orange1.1g041370m.g Citrus sinensis orange1.1g041370m.g N 0.000
Eucgr.D01630 Eucalyptus grandis Eucgr.D01630 N 0.000
Thhalv10017751m.g Eutrema salsugineum Thhalv10017751m.g N 0.000
gene18542-v1.0-hybrid Fragaria vesca gene18542-v1.0-hybrid N 0.000
Lus10005451.g Linum usitatissimum Lus10005451.g N 0.000
Lus10038432.g Linum usitatissimum Lus10038432.g N 0.000
MDP0000209483 Malus domestica MDP0000209483 N 0.000
MDP0000280921 Malus domestica MDP0000280921 N 0.000
GSMUA_Achr11G16900_001 Musa acuminata GSMUA_Achr11G16900_001 N 0.000
GSMUA_AchrUn_randomG20690_001 Musa acuminata GSMUA_AchrUn_randomG20690_001 N 0.000
Pm010610 Prunus mume Pm010610 N 0.000
PRUPE_ppa017597mg Prunus persica PRUPE_ppa017597mg N 0.000
Si038598m.g Setaria italica Si038598m.g N 0.000