OS12G0610200 (Oryza sativa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 OS12G0610200 T043272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.911 0.920
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.898 0.900
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.898 0.900
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.871 0.920
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.871 0.920
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.871 0.920
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.871 0.920
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.871 0.920
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.871 0.920
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.868 0.900
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.868 0.900
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.868 0.900
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.860 0.880
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.854 0.640
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.854 0.600
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS12T0610200-01 bHLH 268 319

Links

Other bHLH family TFs
Other Oryza sativa TFs

491 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004704 Ricinus communis 29929.m004704 D 0.000
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.000
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.000
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.000
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.000
Bo2g138840 Brassica oleracea Bo2g138840 I 0.000
Bo5g017510 Brassica oleracea Bo5g017510 I 0.000
Bo8g107400 Brassica oleracea Bo8g107400 I 0.000
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.000
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.000
Bra019721 Brassica rapa Bra019721 I 0.000
Bra026903 Brassica rapa Bra026903 I 0.000
Bra036354 Brassica rapa Bra036354 I 0.000
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.000
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.000
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.000
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.000
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.000
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.000
Ca_11315 Cicer arietinum Ca_11315 I 0.000
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.000
Cla023054 Citrullus lanatus Cla023054 I 0.000
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.000
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.000
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.000
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.000
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.000
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.000
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.000
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.000
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.000
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.000
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.000
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.000
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.000
GT-1 Arabidopsis thaliana AT1G13450 D 0.000
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.000
GT-4 Arabidopsis thaliana AT3G25990 D 0.000
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.000
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.000
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.000
MDP0000164819 Malus domestica MDP0000164819 D 0.000
MDP0000275412 Malus domestica MDP0000275412 I 0.000
mgf016368m Mimulus guttatus mgf016368m I 0.000
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.000
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.000
OB04G23970 Oryza brachyantha OB04G23970 I 0.000
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.000
OS04G0486400 Oryza sativa OS04G0486400 D 0.000
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.000
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.000
PK20543.1 Cannabis sativa PK20543.1 D 0.000
Pm006885 Prunus mume Pm006885 I 0.000
Pm016214 Prunus mume Pm016214 I 0.000
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.000
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.000
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.000
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.000
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.000
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.000
Si010147m.g Setaria italica Si010147m.g I 0.000
Si036121m.g Setaria italica Si036121m.g I 0.000
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.000
TCM_010751 Theobroma cacao TCM_010751 I 0.000
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.000
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.000
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.000
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.000
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.000