PGSC0003DMG400005860 (Solanum tuberosum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 PGSC0003DMG400005860 T043428_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH14
M09785_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G00870_01 		0.871 0.750
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.852 0.833
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.852 0.833
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.852 0.833
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.852 0.812
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.852 0.792
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.840 0.833
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400015017 bHLH 275 322

Links

Other bHLH family TFs
Other Solanum tuberosum TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc08g008600.2 Solanum lycopersicum Solyc08g008600.2 I 0.914
PGSC0003DMG400005528 Solanum tuberosum PGSC0003DMG400005528 I 0.884
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I 0.884
Pm029399 Prunus mume Pm029399 I 0.884
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I 0.884
MTR_8g024790 Medicago truncatula MTR_8g024790 I 0.884
Solyc10g009290.1 Solanum lycopersicum Solyc10g009290.1 I 0.884
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I 0.884
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I 0.884
MTR_8g024770 Medicago truncatula MTR_8g024770 I 0.884
PRUPE_ppa004680mg Prunus persica PRUPE_ppa004680mg I 0.871
Solyc01g096370.2 Solanum lycopersicum Solyc01g096370.2 I 0.871
PGSC0003DMG400018332 Solanum tuberosum PGSC0003DMG400018332 I 0.871
MDP0000729514 Malus domestica MDP0000729514 I 0.871
MDP0000859492 Malus domestica MDP0000859492 I 0.871
MDP0000242554 Malus domestica MDP0000242554 I 0.871
TCM_005064 Theobroma cacao TCM_005064 I 0.871
evm.TU.supercontig_141.19 Carica papaya evm.TU.supercontig_141.19 I 0.871
POPTR_0002s17750 Populus trichocarpa POPTR_0002s17750 I 0.871
Eucgr.E00019 Eucalyptus grandis Eucgr.E00019 I 0.871
VIT_15s0048g02820 Vitis vinifera VIT_15s0048g02820 I 0.871
mgf001993m Mimulus guttatus mgf001993m I 0.871
gene18651-v1.0-hybrid Fragaria vesca gene18651-v1.0-hybrid I 0.871
Gorai.001G151700 Gossypium raimondii Gorai.001G151700 I 0.871
Aquca_037_00261 Aquilegia coerulea Aquca_037_00261 I 0.871
Bostr.7365s0026 Boechera stricta Bostr.7365s0026 I 0.871
Carubv10001082m.g Capsella rubella Carubv10001082m.g I 0.871
Cagra.4923s0009 Capsella grandiflora Cagra.4923s0009 I 0.871
Gorai.004G149500 Gossypium raimondii Gorai.004G149500 I 0.871
Gorai.007G111800 Gossypium raimondii Gorai.007G111800 I 0.871
Gorai.008G128800 Gossypium raimondii Gorai.008G128800 I 0.871
Al_scaffold_0006_3930 Arabidopsis lyrata Al_scaffold_0006_3930 I 0.871
MDP0000900024 Malus domestica MDP0000900024 I 0.871
27964.m000352 Ricinus communis 27964.m000352 I 0.871
27964.m000356 Ricinus communis 27964.m000356 I 0.871
cassava32651.m1 Manihot esculenta cassava32651.m1 I 0.871
cassava29800.valid.m1 Manihot esculenta cassava29800.valid.m1 I 0.871
VIT_02s0025g02610 Vitis vinifera VIT_02s0025g02610 I 0.871
MDP0000224302 Malus domestica MDP0000224302 I 0.871
SapurV1A.0003s0670 Salix purpurea SapurV1A.0003s0670 I 0.871
BHLH14 Arabidopsis thaliana AT4G00870 D 0.871
GLYMA16G02320 Glycine max GLYMA16G02320 I 0.871
GLYMA07G05740 Glycine max GLYMA07G05740 I 0.871
Ciclev10019749m.g Citrus clementina Ciclev10019749m.g I 0.871
orange1.1g046178m.g Citrus sinensis orange1.1g046178m.g I 0.871
GSMUA_Achr1G18910_001 Musa acuminata GSMUA_Achr1G18910_001 I 0.871
Ca_17603 Cicer arietinum Ca_17603 I 0.870
GLYMA02G09670 Glycine max GLYMA02G09670 I 0.864
Si021549m.g Setaria italica Si021549m.g I 0.864
Sb09g008120 Sorghum bicolor Sb09g008120 I 0.864
Pavir.Cb01851 Panicum virgatum Pavir.Cb01851 I 0.864
AMTR_s00121p00026620 Amborella trichopoda AMTR_s00121p00026620 I 0.864
Pavir.Ca00449 Panicum virgatum Pavir.Ca00449 I 0.864
Cla008954 Citrullus lanatus Cla008954 I 0.861
Cucsa.321840 Cucumis sativus Cucsa.321840 I 0.861
Gorai.004G129600 Gossypium raimondii Gorai.004G129600 I 0.860
Gorai.003G182100 Gossypium raimondii Gorai.003G182100 I 0.852
Bo1g017990 Brassica oleracea Bo1g017990 I 0.852
Bo5g086990 Brassica oleracea Bo5g086990 I 0.852
Carubv10008586m.g Capsella rubella Carubv10008586m.g I 0.852
Bo9g065530 Brassica oleracea Bo9g065530 I 0.852
Bo9g066680 Brassica oleracea Bo9g066680 I 0.852
Bo8g028850 Brassica oleracea Bo8g028850 I 0.852
Bo7g075710 Brassica oleracea Bo7g075710 I 0.852
Bo01130s010 Brassica oleracea Bo01130s010 I 0.852
Carubv10004392m.g Capsella rubella Carubv10004392m.g I 0.852
MYC3 Arabidopsis thaliana AT5G46760 D 0.852
Cagra.7865s0024 Capsella grandiflora Cagra.7865s0024 I 0.852
gene10501-v1.0-hybrid Fragaria vesca gene10501-v1.0-hybrid I 0.852
Cagra.0751s0023 Capsella grandiflora Cagra.0751s0023 I 0.852
MYC2 Arabidopsis thaliana AT1G32640 D 0.852
chr2.CM0177.830.nc Lotus japonicus chr2.CM0177.830.nc I 0.852
Bostr.3359s0090 Boechera stricta Bostr.3359s0090 I 0.852
Bra010178 Brassica rapa Bra010178 I 0.852
mgf002775m Mimulus guttatus mgf002775m I 0.852
MYC4 Arabidopsis thaliana AT4G17880 D 0.852
Bostr.28243s0060 Boechera stricta Bostr.28243s0060 I 0.852
Bostr.30275s0255 Boechera stricta Bostr.30275s0255 I 0.852
Cagra.3356s0080 Capsella grandiflora Cagra.3356s0080 I 0.852
Ca_12352 Cicer arietinum Ca_12352 I 0.852
PRUPE_ppa002404mg Prunus persica PRUPE_ppa002404mg I 0.852
SapurV1A.0151s0080 Salix purpurea SapurV1A.0151s0080 I 0.852
GLYMA01G12740 Glycine max GLYMA01G12740 I 0.852
GLYMA01G02251 Glycine max GLYMA01G02251 I 0.852
ATMYC2 Arabidopsis lyrata scaffold_103634.1 I 0.852
POPTR_0003s09090 Populus trichocarpa POPTR_0003s09090 I 0.852
GLYMA08G36720 Glycine max GLYMA08G36720 I 0.852
MTR_5g030430 Medicago truncatula MTR_5g030430 I 0.852
Carubv10028441m.g Capsella rubella Carubv10028441m.g I 0.852
PGSC0003DMG400001161 Solanum tuberosum PGSC0003DMG400001161 I 0.852
GLYMA09G33730 Glycine max GLYMA09G33730 I 0.852
PGSC0003DMG400017535 Solanum tuberosum PGSC0003DMG400017535 I 0.852
scaffold_800152.1 Arabidopsis lyrata scaffold_800152.1 I 0.852
fgenesh2_kg.7__2520__AT4G17880.1 Arabidopsis lyrata fgenesh2_kg.7__2520__AT4G17880.1 I 0.852
Ca_11514 Cicer arietinum Ca_11514 I 0.852
MDP0000136498 Malus domestica MDP0000136498 I 0.852
PK18474.1 Cannabis sativa PK18474.1 D 0.852
MDP0000029168 Malus domestica MDP0000029168 I 0.852
Bra013263 Brassica rapa Bra013263 I 0.852
Bra017523 Brassica rapa Bra017523 I 0.852
Bra017527 Brassica rapa Bra017527 I 0.852
Solyc08g076930.1 Solanum lycopersicum Solyc08g076930.1 I 0.852
Thhalv10000808m.g Eutrema salsugineum Thhalv10000808m.g I 0.852
Thhalv10007075m.g Eutrema salsugineum Thhalv10007075m.g I 0.852
Bra024998 Brassica rapa Bra024998 I 0.852
Thhalv10024688m.g Eutrema salsugineum Thhalv10024688m.g I 0.852
Pm023237 Prunus mume Pm023237 I 0.852
MDP0000160600 Malus domestica MDP0000160600 I 0.851
PK23618.1 Cannabis sativa PK23618.1 I 0.851
MDP0000603546 Malus domestica MDP0000603546 I 0.851
Cla006801 Citrullus lanatus Cla006801 I 0.851
Cla006802 Citrullus lanatus Cla006802 I 0.851
Bra024993 Brassica rapa Bra024993 I 0.851
Cucsa.120830 Cucumis sativus Cucsa.120830 I 0.851
SapurV1A.0059s0390 Salix purpurea SapurV1A.0059s0390 I 0.849
GLYMA17G16720 Glycine max GLYMA17G16720 I 0.849
GLYMA05G23530 Glycine max GLYMA05G23530 I 0.849
POPTR_0003s14710 Populus trichocarpa POPTR_0003s14710 I 0.849
cassava39612.m1 Manihot esculenta cassava39612.m1 I 0.849
MTR_8g067280 Medicago truncatula MTR_8g067280 I 0.849
Gorai.004G184800 Gossypium raimondii Gorai.004G184800 I 0.849
cassava45234.m1 Manihot esculenta cassava45234.m1 I 0.849
gene13705-v1.0-hybrid Fragaria vesca gene13705-v1.0-hybrid I 0.849
Bra017520 Brassica rapa Bra017520 I 0.849
PDK_20s1377121g004 Phoenix dactylifera PDK_20s1377121g004 I 0.849
cassava45233.m1 Manihot esculenta cassava45233.m1 I 0.849
cassava45188.m1 Manihot esculenta cassava45188.m1 I 0.849
cassava40529.m1 Manihot esculenta cassava40529.m1 I 0.849
Cla007989 Citrullus lanatus Cla007989 I 0.847
Lus10005999.g Linum usitatissimum Lus10005999.g I 0.847
GSMUA_Achr10G07470_001 Musa acuminata GSMUA_Achr10G07470_001 I 0.847
MTR_4g097950 Medicago truncatula MTR_4g097950 I 0.846
Ca_09378 Cicer arietinum Ca_09378 I 0.846
Thhalv10007139m.g Eutrema salsugineum Thhalv10007139m.g I 0.840
Bra033273 Brassica rapa Bra033273 I 0.840
Bostr.5325s0049 Boechera stricta Bostr.5325s0049 I 0.840
Bo5g002590 Brassica oleracea Bo5g002590 I 0.840
Cagra.1968s0070 Capsella grandiflora Cagra.1968s0070 I 0.840
BHLH13 Arabidopsis thaliana AT1G01260 D 0.840
Thhalv10000853m.g Eutrema salsugineum Thhalv10000853m.g I 0.840
fgenesh2_kg.1__101__AT1G01260.1 Arabidopsis lyrata fgenesh2_kg.1__101__AT1G01260.1 I 0.840
GSMUA_Achr8G14720_001 Musa acuminata GSMUA_Achr8G14720_001 I 0.840
GSMUA_Achr11G17840_001 Musa acuminata GSMUA_Achr11G17840_001 I 0.840
GSMUA_Achr2G18140_001 Musa acuminata GSMUA_Achr2G18140_001 I 0.840
GSMUA_AchrUn_randomG02900_001 Musa acuminata GSMUA_AchrUn_randomG02900_001 I 0.840
Carubv10008640m.g Capsella rubella Carubv10008640m.g I 0.840
SapurV1A.0162s0110 Salix purpurea SapurV1A.0162s0110 I 0.840
POPTR_0014s09950 Populus trichocarpa POPTR_0014s09950 I 0.840
GSMUA_Achr7G04720_001 Musa acuminata GSMUA_Achr7G04720_001 I 0.840