CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400017440
(
Solanum tuberosum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
PGSC0003DMG400017440
T043467_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.843
0.540
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400044959
bHLH
39
88
QSSKNIVSERIRRNKLKEKLFALRAHVPKITKMDKASIVKDAIAYIEELQ
Links
Other
bHLH
family TFs
Other
Solanum tuberosum
TFs
197 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc05g014590.2
Solanum lycopersicum
Solyc05g014590.2
I
0.914
estExt_fgenesh1_pg.C_1590022
Physcomitrella patens
estExt_fgenesh1_pg.C_1590022
I
0.887
estExt_gwp_gw1.C_1820005
Physcomitrella patens
estExt_gwp_gw1.C_1820005
I
0.887
SELMODRAFT_430203
Selaginella moellendorffii
SELMODRAFT_430203
I
0.887
Cucsa.010660
Cucumis sativus
Cucsa.010660
I
0.887
Cla016068
Citrullus lanatus
Cla016068
I
0.887
SELMODRAFT_451590
Selaginella moellendorffii
SELMODRAFT_451590
I
0.887
e_gw1.25.105.1
Physcomitrella patens
e_gw1.25.105.1
I
0.887
fgenesh1_pg.scaffold_1000274
Physcomitrella patens
fgenesh1_pg.scaffold_1000274
I
0.887
SELMODRAFT_16038
Selaginella moellendorffii
SELMODRAFT_16038
I
0.887
SELMODRAFT_16039
Selaginella moellendorffii
SELMODRAFT_16039
I
0.887
Lus10030609.g
Linum usitatissimum
Lus10030609.g
N
0.878
TCM_006602
Theobroma cacao
TCM_006602
I
0.874
PK03241.1
Cannabis sativa
PK03241.1
I
0.874
POPTR_0006s07420
Populus trichocarpa
POPTR_0006s07420
I
0.870
GSMUA_Achr1G07450_001
Musa acuminata
GSMUA_Achr1G07450_001
I
0.867
PGSC0003DMG400014246
Solanum tuberosum
PGSC0003DMG400014246
I
0.867
estExt_fgenesh1_pg.C_1240017
Physcomitrella patens
estExt_fgenesh1_pg.C_1240017
I
0.867
evm.TU.supercontig_1024.1
Carica papaya
evm.TU.supercontig_1024.1
I
0.867
PDK_20s1347451g001
Phoenix dactylifera
PDK_20s1347451g001
I
0.867
Aquca_072_00056
Aquilegia coerulea
Aquca_072_00056
I
0.867
Aquca_019_00147
Aquilegia coerulea
Aquca_019_00147
I
0.867
gw1.90.96.1
Physcomitrella patens
gw1.90.96.1
I
0.867
GSMUA_Achr1G07330_001
Musa acuminata
GSMUA_Achr1G07330_001
I
0.867
Si006199m.g
Setaria italica
Si006199m.g
I
0.867
PRUPE_ppa010972mg
Prunus persica
PRUPE_ppa010972mg
I
0.863
Pm008898
Prunus mume
Pm008898
I
0.863
gene00631-v1.0-hybrid
Fragaria vesca
gene00631-v1.0-hybrid
N
0.863
OMERI03G04020
Oryza meridionalis
OMERI03G04020
N
0.860
Sb07g004190
Sorghum bicolor
Sb07g004190
N
0.860
OS04G0301500
Oryza sativa
OS04G0301500
N
0.860
ONIVA01G07170
Oryza nivara
ONIVA01G07170
N
0.860
BRADI5G05110
Brachypodium distachyon
BRADI5G05110
N
0.860
ORUFI04G07860
Oryza rufipogon
ORUFI04G07860
N
0.860
OPUNC04G05630
Oryza punctata
OPUNC04G05630
N
0.860
Si010812m.g
Setaria italica
Si010812m.g
N
0.860
Pavir.Ga02256
Panicum virgatum
Pavir.Ga02256
N
0.860
Pavir.Gb02205
Panicum virgatum
Pavir.Gb02205
N
0.860
gene23715-v1.0-hybrid
Fragaria vesca
gene23715-v1.0-hybrid
I
0.860
BGIOSGA040642
Oryza indica
BGIOSGA040642
N
0.860
MLOC_62844
Hordeum vulgare
MLOC_62844
N
0.860
Traes_2BL_8FED05903
Triticum aestivum
Traes_2BL_8FED05903
N
0.860
Si010413m.g
Setaria italica
Si010413m.g
N
0.860
Traes_2DL_DE3909A32
Triticum aestivum
Traes_2DL_DE3909A32
N
0.860
GSMUA_Achr10G23370_001
Musa acuminata
GSMUA_Achr10G23370_001
I
0.860
GSMUA_Achr7G16000_001
Musa acuminata
GSMUA_Achr7G16000_001
I
0.860
GRMZM2G042895
Zea mays
GRMZM2G042895
N
0.860
LPERR04G04520
Leersia perrieri
LPERR04G04520
N
0.860
Pavir.Ga02255
Panicum virgatum
Pavir.Ga02255
N
0.859
POPTR_0018s13850
Populus trichocarpa
POPTR_0018s13850
I
0.857
SapurV1A.0140s0250
Salix purpurea
SapurV1A.0140s0250
I
0.857
GRMZM2G042893
Zea mays
GRMZM2G042893
N
0.857
SapurV1A.0140s0240
Salix purpurea
SapurV1A.0140s0240
I
0.857
SapurV1A.3355s0020
Salix purpurea
SapurV1A.3355s0020
I
0.857
POPTR_0018s13830
Populus trichocarpa
POPTR_0018s13830
I
0.857
SapurV1A.3355s0010
Salix purpurea
SapurV1A.3355s0010
I
0.857
mgf019723m
Mimulus guttatus
mgf019723m
I
0.857
Si019518m.g
Setaria italica
Si019518m.g
I
0.857
29631.m001025
Ricinus communis
29631.m001025
N
0.855
ORUFI04G07840
Oryza rufipogon
ORUFI04G07840
N
0.855
OBART04G06800
Oryza barthii
OBART04G06800
N
0.855
ORGLA04G0051300
Oryza glaberrima
ORGLA04G0051300
N
0.855
OGLUM04G06590
Oryza glumaepatula
OGLUM04G06590
N
0.855
OMERI03G04040
Oryza meridionalis
OMERI03G04040
N
0.855
OS04G0300600
Oryza sativa
OS04G0300600
N
0.855
OPUNC04G05620
Oryza punctata
OPUNC04G05620
N
0.855
VIT_01s0127g00860
Vitis vinifera
VIT_01s0127g00860
I
0.854
evm.TU.supercontig_20.95
Carica papaya
evm.TU.supercontig_20.95
I
0.854
Eucgr.G01783
Eucalyptus grandis
Eucgr.G01783
I
0.854
Solyc08g062780.1
Solanum lycopersicum
Solyc08g062780.1
I
0.850
Gorai.008G036900
Gossypium raimondii
Gorai.008G036900
I
0.850
PGSC0003DMG400008195
Solanum tuberosum
PGSC0003DMG400008195
I
0.850
Lus10030880.g
Linum usitatissimum
Lus10030880.g
N
0.848
GSMUA_Achr6G30900_001
Musa acuminata
GSMUA_Achr6G30900_001
N
0.847
Pm020879
Prunus mume
Pm020879
I
0.844
PRUPE_ppa022211mg
Prunus persica
PRUPE_ppa022211mg
I
0.844
mgf016462m
Mimulus guttatus
mgf016462m
I
0.843
mgf015974m
Mimulus guttatus
mgf015974m
I
0.843
mgf012194m
Mimulus guttatus
mgf012194m
I
0.843
gw1.257.54.1
Physcomitrella patens
gw1.257.54.1
I
0.843
Bo5g016510
Brassica oleracea
Bo5g016510
I
0.843
Bo00285s440
Brassica oleracea
Bo00285s440
I
0.843
PK06940.1
Cannabis sativa
PK06940.1
I
0.843
Bostr.13671s0164
Boechera stricta
Bostr.13671s0164
I
0.843
Bostr.0556s0344
Boechera stricta
Bostr.0556s0344
I
0.843
Aquca_100_00035
Aquilegia coerulea
Aquca_100_00035
I
0.843
LjSGA_024382.1
Lotus japonicus
LjSGA_024382.1
I
0.843
GRMZM2G173534
Zea mays
GRMZM2G173534
I
0.843
chr1.CM1880.50.nc
Lotus japonicus
chr1.CM1880.50.nc
I
0.843
Bo8g065080
Brassica oleracea
Bo8g065080
I
0.843
Cucsa.134750
Cucumis sativus
Cucsa.134750
I
0.843
Cucsa.156040
Cucumis sativus
Cucsa.156040
I
0.843
Bra025226
Brassica rapa
Bra025226
I
0.843
SCRM2
Arabidopsis thaliana
AT1G12860
I
0.843
cassava37254.valid.m1
Manihot esculenta
cassava37254.valid.m1
I
0.843
Bra019794
Brassica rapa
Bra019794
I
0.843
Bra016749
Brassica rapa
Bra016749
I
0.843
Cagra.23157s0001
Capsella grandiflora
Cagra.23157s0001
I
0.843
estExt_Genewise1.C_510113
Physcomitrella patens
estExt_Genewise1.C_510113
I
0.843
estExt_fgenesh1_pg.C_300202
Physcomitrella patens
estExt_fgenesh1_pg.C_300202
I
0.843
Bo9g008020
Brassica oleracea
Bo9g008020
I
0.843
Bo7g083870
Brassica oleracea
Bo7g083870
I
0.843
PK06841.1
Cannabis sativa
PK06841.1
I
0.843
MDP0000247912
Malus domestica
MDP0000247912
I
0.843
MDP0000304669
Malus domestica
MDP0000304669
I
0.843
MDP0000219146
Malus domestica
MDP0000219146
I
0.843
cassava17838.valid.m1
Manihot esculenta
cassava17838.valid.m1
I
0.843
BGIOSGA000206
Oryza indica
BGIOSGA000206
I
0.843
SapurV1A.0672s0200
Salix purpurea
SapurV1A.0672s0200
I
0.843
SapurV1A.0517s0250
Salix purpurea
SapurV1A.0517s0250
I
0.843
Pavir.Ea03858
Panicum virgatum
Pavir.Ea03858
I
0.843
Pavir.Hb00982
Panicum virgatum
Pavir.Hb00982
I
0.843
orange1.1g047004m.g
Citrus sinensis
orange1.1g047004m.g
I
0.843
orange1.1g011370m.g
Citrus sinensis
orange1.1g011370m.g
I
0.843
MDP0000662999
Malus domestica
MDP0000662999
I
0.843
SapurV1A.0774s0030
Salix purpurea
SapurV1A.0774s0030
I
0.843
Gorai.007G072600
Gossypium raimondii
Gorai.007G072600
I
0.843
Thhalv10007566m.g
Eutrema salsugineum
Thhalv10007566m.g
I
0.843
Eucgr.G01938
Eucalyptus grandis
Eucgr.G01938
I
0.843
Ciclev10015052m.g
Citrus clementina
Ciclev10015052m.g
I
0.843
SCRM
Arabidopsis thaliana
AT3G26744
D
0.843
Pavir.Eb03736
Panicum virgatum
Pavir.Eb03736
I
0.843
BGIOSGA035358
Oryza indica
BGIOSGA035358
I
0.843
Thhalv10004059m.g
Eutrema salsugineum
Thhalv10004059m.g
I
0.843
Gorai.001G275600
Gossypium raimondii
Gorai.001G275600
I
0.843
Gorai.007G044800
Gossypium raimondii
Gorai.007G044800
I
0.843
gene06435-v1.0-hybrid
Fragaria vesca
gene06435-v1.0-hybrid
I
0.843
GRMZM2G172297
Zea mays
GRMZM2G172297
I
0.843
evm.TU.supercontig_70.77
Carica papaya
evm.TU.supercontig_70.77
I
0.843
Carubv10017099m.g
Capsella rubella
Carubv10017099m.g
I
0.843
Ca_01394
Cicer arietinum
Ca_01394
I
0.843
POPTR_0012s10780
Populus trichocarpa
POPTR_0012s10780
I
0.843
POPTR_0015s11650
Populus trichocarpa
POPTR_0015s11650
I
0.843
PRUPE_ppa005038mg
Prunus persica
PRUPE_ppa005038mg
I
0.843
GLYMA06G17330
Glycine max
GLYMA06G17330
I
0.843
GLYMA16G05390
Glycine max
GLYMA16G05390
I
0.843
OS01G0928000
Oryza sativa
OS01G0928000
I
0.843
OS11G0523700
Oryza sativa
OS11G0523700
I
0.843
PRUPE_ppa018220mg
Prunus persica
PRUPE_ppa018220mg
I
0.843
Sb03g044660
Sorghum bicolor
Sb03g044660
I
0.843
GLYMA04G37750
Glycine max
GLYMA04G37750
I
0.843
ICE1
Arabidopsis lyrata
fgenesh2_kg.5__441__AT3G26744.2
I
0.843
SELMODRAFT_138758
Selaginella moellendorffii
SELMODRAFT_138758
I
0.843
SELMODRAFT_119431
Selaginella moellendorffii
SELMODRAFT_119431
I
0.843
Sb05g019530
Sorghum bicolor
Sb05g019530
I
0.843
GSMUA_Achr6G08070_001
Musa acuminata
GSMUA_Achr6G08070_001
I
0.843
ORUFI11G16280
Oryza rufipogon
ORUFI11G16280
I
0.843
LPERR01G37160
Leersia perrieri
LPERR01G37160
I
0.843
MLOC_46407
Hordeum vulgare
MLOC_46407
I
0.843
OMERI11G12580
Oryza meridionalis
OMERI11G12580
I
0.843
OMERI01G39590
Oryza meridionalis
OMERI01G39590
I
0.843
OGLUM11G14700
Oryza glumaepatula
OGLUM11G14700
I
0.843
OBART11G15260
Oryza barthii
OBART11G15260
I
0.843
OGLUM01G46870
Oryza glumaepatula
OGLUM01G46870
I
0.843
LPERR11G11940
Leersia perrieri
LPERR11G11940
I
0.843
ONIVA01G48650
Oryza nivara
ONIVA01G48650
I
0.843
ORGLA11G0129200
Oryza glaberrima
ORGLA11G0129200
I
0.843
ORUFI01G46010
Oryza rufipogon
ORUFI01G46010
I
0.843
ORGLA01G0363500
Oryza glaberrima
ORGLA01G0363500
I
0.843
OPUNC11G12640
Oryza punctata
OPUNC11G12640
I
0.843
ONIVA12G10770
Oryza nivara
ONIVA12G10770
I
0.843
OPUNC01G41620
Oryza punctata
OPUNC01G41620
I
0.843
30147.m014419
Ricinus communis
30147.m014419
I
0.843
F775_14780
Aegilops tauschii
F775_14780
I
0.843
VIT_01s0244g00130
Vitis vinifera
VIT_01s0244g00130
I
0.843
VIT_14s0068g01200
Vitis vinifera
VIT_14s0068g01200
I
0.843
TRIUR3_17003
Triticum urartu
TRIUR3_17003
I
0.843
Traes_7DL_2A7EF919F
Triticum aestivum
Traes_7DL_2A7EF919F
I
0.843
Traes_7AL_ACAC47D88
Triticum aestivum
Traes_7AL_ACAC47D88
I
0.843
Traes_7BL_BF5300D88
Triticum aestivum
Traes_7BL_BF5300D88
I
0.843
VIT_17s0000g00330
Vitis vinifera
VIT_17s0000g00330
I
0.843
MLOC_76805
Hordeum vulgare
MLOC_76805
I
0.843
Pm016093
Prunus mume
Pm016093
I
0.843
Pm024587
Prunus mume
Pm024587
I
0.843
GSMUA_Achr10G12060_001
Musa acuminata
GSMUA_Achr10G12060_001
I
0.843
Bra032947
Brassica rapa
Bra032947
I
0.843
Cla002682
Citrullus lanatus
Cla002682
I
0.843
Cla003283
Citrullus lanatus
Cla003283
I
0.843
TRAES3BF001100060CFD_g
Triticum aestivum
TRAES3BF001100060CFD_g
I
0.843
GRMZM2G033356
Zea mays
GRMZM2G033356
I
0.843
Si001874m.g
Setaria italica
Si001874m.g
I
0.843
AMTR_s00016p00170610
Amborella trichopoda
AMTR_s00016p00170610
I
0.843
SELMODRAFT_94010
Selaginella moellendorffii
SELMODRAFT_94010
I
0.843
SELMODRAFT_91237
Selaginella moellendorffii
SELMODRAFT_91237
I
0.843
MTR_3g498695
Medicago truncatula
MTR_3g498695
I
0.843
SELMODRAFT_75047
Selaginella moellendorffii
SELMODRAFT_75047
I
0.843
GLYMA19G27483
Glycine max
GLYMA19G27483
I
0.843
Si026212m.g
Setaria italica
Si026212m.g
I
0.843
TCM_017336
Theobroma cacao
TCM_017336
I
0.843
GSMUA_Achr10G18380_001
Musa acuminata
GSMUA_Achr10G18380_001
I
0.843
TCM_014741
Theobroma cacao
TCM_014741
I
0.843
Bra034246
Brassica rapa
Bra034246
I
0.843
Solyc03g118310.2
Solanum lycopersicum
Solyc03g118310.2
I
0.843
BRADI2G59497
Brachypodium distachyon
BRADI2G59497
I
0.843
OBART01G42600
Oryza barthii
OBART01G42600
I
0.843
GRMZM2G119823
Zea mays
GRMZM2G119823
I
0.840
GLYMA16G26291
Glycine max
GLYMA16G26291
I
0.840