CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400019263
(
Solanum tuberosum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
PGSC0003DMG400019263
T043477_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH34
M01704_2.00
Arabidopsis thaliana
VCACGYGH
DCRCGTGB
PBM
Weirauch et al.(2014)
pTH7212
0.879
0.745
BHLH34
M06734_2.00
Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN
Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a
0.879
0.745
BHLH34
M06735_2.00
Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY
Dap-seq
OMalley et al.(2016)
bHLH34_col
0.879
0.745
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400049590
bHLH
76
126
TSSKACREKLRRDKLNDKFMELGALLEPGRPPKTDKSAILVDAVRMVEKTE
PGSC0003DMT400049592
bHLH
76
126
TSSKACREKLRRDKLNDKFMELGALLEPGRPPKTDKSAILVDAVRMVTQLR
Links
Other
bHLH
family TFs
Other
Solanum tuberosum
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy