POPTR_0002s14430 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0002s14430 T043772_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM

KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.914 0.960
OS01G0235700
M09894_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BHLH66_01
0.843 0.480
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.843 0.520
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.843 0.520
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.843 0.520
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.843 0.520
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.843 0.480
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.843 0.480
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.843 0.480
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.840 0.700
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.840 0.680
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.840 0.680
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.840 0.680
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.840 0.680
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.840 0.680
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s14430.1 bHLH 294 343
POPTR_0002s14430.2 bHLH 294 333
POPTR_0002s14430.3 bHLH 242 291

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

423 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PMAA_070340 Penicillium marneffei PMAA_070340 I 0.000
PEX1_083360 Penicillium expansum PEX1_083360 I 0.000
PDIP_85460 Penicillium digitatum PDIP_85460 I 0.000
PDE_04102 Penicillium oxalicum PDE_04102 I 0.000
PABG_04642 Paracoccidioides brasiliensis PABG_04642 I 0.000
PAAG_08490 Paracoccidioides sp lutzii PAAG_08490 I 0.000
OIDMADRAFT_112327 Oidiodendron maius OIDMADRAFT_112327 I 0.000
MGYG_00861 Microsporum gypseum MGYG_00861 I 0.000
MGU_05623 Metarhizium guizhouense MGU_05623 I 0.000
MCYG_00297 Arthroderma otae MCYG_00297 I 0.000
MBR_04335 Metarhizium brunneum MBR_04335 I 0.000
MBM_05016 Marssonina brunnea MBM_05016 I 0.000
MAM_05041 Metarhizium album MAM_05041 I 0.000
MAJ_05180 Metarhizium majus MAJ_05180 I 0.000
PFICI_07122 Pestalotiopsis fici PFICI_07122 I 0.000
PITC_041810 Penicillium italicum PITC_041810 I 0.000
PMAA_070340 Talaromyces marneffei PMAA_070340 I 0.000
VHEMI00437 Torrubiella hemipterigena VHEMI00437 I 0.000
UV8b_4097 Ustilaginoidea virens UV8b_4097 I 0.000
TSTA_090670 Talaromyces stipitatus TSTA_090670 I 0.000
TRIVIDRAFT_122714 Trichoderma virens TRIVIDRAFT_122714 I 0.000
TRIREDRAFT_49372 Trichoderma reesei TRIREDRAFT_49372 I 0.000
TRIATDRAFT_161814 Trichoderma atroviride TRIATDRAFT_161814 I 0.000
TESG_02247 Trichophyton tonsurans TESG_02247 I 0.000
TEQG_02692 Trichophyton equinum TEQG_02692 I 0.000
SS1G_05371 Sclerotinia sclerotiorum SS1G_05371 I 0.000
SBOR_3621 Sclerotinia borealis SBOR_3621 I 0.000
S40288_07421 Stachybotrys chartarum S40288_07421 I 0.000
PVAR5_8925 Byssochlamys spectabilis PVAR5_8925 I 0.000
PV07_06437 Cladophialophora immunda PV07_06437 I 0.000
MAC_03900 Metarhizium acridum MAC_03900 I 0.000
A1O3_03291 Capronia epimyces A1O3_03291 I 0.000
CADAORAG00005589 Aspergillus oryzae CADAORAG00005589 I 0.000
ANIA_05849 Aspergillus nidulans CADANIAG00007192 I 0.000
AFUA_2G08040 Aspergillus fumigatus CADAFUAG00004446 I 0.000
ACLA_079920 Aspergillus clavatus CADACLAG00007683 I 0.000
BDDG_04796 Blastomyces dermatitidis BDDG_04796 I 0.000
Bcin09g02560 Botrytis cinerea Bcin09g02560 I 0.000
BBA_08191 Beauveria bassiana BBA_08191 I 0.000
AUEXF2481DRAFT_25614 Aureobasidium subglaciale AUEXF2481DRAFT_25614 I 0.000
U727_0043004001 Penicillium solitum U727_0043004001 I 0.000
ACRE_088710 Acremonium chrysogenum ACRE_088710 I 0.000
A1O9_13001 Exophiala aquamarina A1O9_13001 I 0.000
A1O9_03542 Exophiala aquamarina A1O9_03542 I 0.000
NFIA_024310 Neosartorya fischeri CADNFIAG00002261 I 0.000
NFIA_083690 Neosartorya fischeri CADNFIAG00006940 I 0.000
GSTUM_00005598001 Tuber melanosporum GSTUM_00005598001 I 0.000
EURHEDRAFT_513914 Aspergillus ruber EURHEDRAFT_513914 I 0.000
DRE_04286 Drechslerella stenobrocha DRE_04286 I 0.000
EV44_g6283 Erysiphe necator EV44_g6283 I 0.000
MCYG_00297 Microsporum canis MCYG_00297 I 0.000
CTHT_0050850 Chaetomium thermophilum CTHT_0050850 I 0.000
CPUR_01702 Claviceps purpurea CPUR_01702 I 0.000
CCM_00913 Cordyceps militaris CCM_00913 I 0.000
H072_8333 Dactylellina haptotyla H072_8333 I 0.000
H101_07435 Trichophyton interdigitale H101_07435 I 0.000
HCBG_04625 Histoplasma capsulatum HCBG_04625 I 0.000
AOL_s00083g362 Arthrobotrys oligospora AOL_s00083g362 N 0.000
UREG_00865 Uncinocarpus reesii UREG_00865 N 0.000
A1O1_08282 Capronia coronata A1O1_08282 N 0.000
G647_04707 Cladophialophora carrionii G647_04707 N 0.000
Z517_10110 Fonsecaea pedrosoi Z517_10110 N 0.000
Z519_00024 Cladophialophora bantiana Z519_00024 N 0.000
Pc22g26430 Penicillium chrysogenum Pc22g26430 N 0.000
Pc24g00780 Penicillium chrysogenum Pc24g00780 N 0.000
Pc24g01310 Penicillium chrysogenum Pc24g01310 N 0.000
A1O5_00025 Cladophialophora psammophila A1O5_00025 N 0.000
M438DRAFT_351239 Aureobasidium pullulans M438DRAFT_351239 N 0.000
PCH_Pc24g00780 Penicillium rubens PCH_Pc24g00780 N 0.000
CIMG_00917 Coccidioides immitis CIMG_00917 N 0.000
PCH_Pc22g26430 Penicillium rubens PCH_Pc22g26430 N 0.000
HMPREF1120_05352 Exophiala dermatitidis HMPREF1120_05352 N 0.000
PV04_03866 Capronia semiimmersa PV04_03866 N 0.000
PV06_00266 Exophiala oligosperma PV06_00266 N 0.000
PV08_04106 Exophiala spinifera PV08_04106 N 0.000
PV10_05308 Exophiala mesophila PV10_05308 N 0.000
PV11_00815 Exophiala sideris PV11_00815 N 0.000
PCH_Pc24g01310 Penicillium rubens PCH_Pc24g01310 N 0.000
A1O7_03671 Cladophialophora yegresii A1O7_03671 N 0.000