CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0003s12810
(
Populus trichocarpa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
POPTR_0003s12810
T043783_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK03576.1
M01119_2.00
Cannabis sativa
NCACGTGCN
NGCACGTGN
PBM
Lambert et al.(2019)
pTH10095
0.843
0.694
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0003s12810.1
bHLH
426
474
GASHVLSERRRREKLNKRFMILKSIVPSISKVDKVSILDDTIQYLQELE
Links
Other
bHLH
family TFs
Other
Populus trichocarpa
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0612s0160
Salix purpurea
SapurV1A.0612s0160
N
0.890
PRUPE_ppa002762mg
Prunus persica
PRUPE_ppa002762mg
I
0.881
Pm023805
Prunus mume
Pm023805
I
0.881
gene32494-v1.0-hybrid
Fragaria vesca
gene32494-v1.0-hybrid
I
0.881
GL3
Arabidopsis thaliana
AT5G41315
I
0.879
Thhalv10027709m.g
Eutrema salsugineum
Thhalv10027709m.g
I
0.879
GL3
Arabidopsis lyrata
fgenesh2_kg.7__3280__AT5G41315.1
I
0.879
Bostr.7200s0145
Boechera stricta
Bostr.7200s0145
I
0.879
Carubv10004345m.g
Capsella rubella
Carubv10004345m.g
I
0.879
Bra025508
Brassica rapa
Bra025508
I
0.879
Bo4g141990
Brassica oleracea
Bo4g141990
I
0.879
cassava8594.m1
Manihot esculenta
cassava8594.m1
I
0.873
TCM_016261
Theobroma cacao
TCM_016261
I
0.868
mgf005803m
Mimulus guttatus
mgf005803m
I
0.859
LjSGA_008146.1
Lotus japonicus
LjSGA_008146.1
I
0.857
GLYMA05G37770
Glycine max
GLYMA05G37770
N
0.857
GLYMA08G01810
Glycine max
GLYMA08G01810
I
0.857
MTR_8g098275
Medicago truncatula
MTR_8g098275
I
0.857
Ca_05750
Cicer arietinum
Ca_05750
I
0.857
Bra027653
Brassica rapa
Bra027653
N
0.855
Thhalv10023356m.g
Eutrema salsugineum
Thhalv10023356m.g
N
0.855
Carubv10019965m.g
Capsella rubella
Carubv10019965m.g
N
0.855
Bo9g029230
Brassica oleracea
Bo9g029230
N
0.855
Bostr.29223s0199
Boechera stricta
Bostr.29223s0199
N
0.855
BHLH2
Arabidopsis thaliana
AT1G63650
N
0.855
Bra027796
Brassica rapa
Bra027796
N
0.855
EGL3
Arabidopsis lyrata
fgenesh2_kg.2__120__AT1G63650.2
N
0.855
Cagra.2104s0007
Capsella grandiflora
Cagra.2104s0007
N
0.855
Sb06g016380
Sorghum bicolor
Sb06g016380
N
0.845
VIT_02s0025g03450
Vitis vinifera
VIT_02s0025g03450
N
0.844
PK03576.1
Cannabis sativa
PK03576.1
D
0.843
Gorai.007G023500
Gossypium raimondii
Gorai.007G023500
N
0.838