POPTR_0008s07090 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0008s07090 T043839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK01630.1
M01118_2.00
Cannabis sativa
GCACGTGD

HCACGTGC
PBM
Lambert et al.(2019)
pTH11426
0.914 0.880
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s07090.1 bHLH 67 116

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK01630.1 Cannabis sativa PK01630.1 D 0.914
Bra000177 Brassica rapa Bra000177 I 0.845
cassava37862.valid.m1 Manihot esculenta cassava37862.valid.m1 I 0.914
Cucsa.136730 Cucumis sativus Cucsa.136730 I 0.914
Ciclev10032356m.g Citrus clementina Ciclev10032356m.g I 0.914
Eucgr.J00190 Eucalyptus grandis Eucgr.J00190 I 0.914
evm.TU.supercontig_19.156 Carica papaya evm.TU.supercontig_19.156 I 0.914
gene21000-v1.0-hybrid Fragaria vesca gene21000-v1.0-hybrid I 0.884
Gorai.011G292100 Gossypium raimondii Gorai.011G292100 I 0.894
Gorai.012G078100 Gossypium raimondii Gorai.012G078100 I 0.873
Lus10007502.g Linum usitatissimum Lus10007502.g I 0.914
Lus10028978.g Linum usitatissimum Lus10028978.g I 0.914
orange1.1g023629m.g Citrus sinensis orange1.1g023629m.g I 0.914
SapurV1A.0061s0470 Salix purpurea SapurV1A.0061s0470 I 0.914
29814.m000735 Ricinus communis 29814.m000735 I 0.894
Pm018950 Prunus mume Pm018950 I 0.914
Cla006707 Citrullus lanatus Cla006707 I 0.914
fgenesh2_kg.108__1__AT2G40200.1 Arabidopsis lyrata fgenesh2_kg.108__1__AT2G40200.1 I 0.845
GLYMA02G42570 Glycine max GLYMA02G42570 I 0.873
GLYMA11G35480 Glycine max GLYMA11G35480 I 0.914
GLYMA18G02940 Glycine max GLYMA18G02940 I 0.914
MTR_3g070970 Medicago truncatula MTR_3g070970 I 0.894
PGSC0003DMG400015659 Solanum tuberosum PGSC0003DMG400015659 I 0.846
PGSC0003DMG400027725 Solanum tuberosum PGSC0003DMG400027725 I 0.873
POPTR_0010s19400 Populus trichocarpa POPTR_0010s19400 I 0.912
PRUPE_ppa010134mg Prunus persica PRUPE_ppa010134mg I 0.914
Solyc03g095980.2 Solanum lycopersicum Solyc03g095980.2 I 0.873
TCM_042475 Theobroma cacao TCM_042475 I 0.914
VIT_13s0067g01350 Vitis vinifera VIT_13s0067g01350 I 0.914
Ca_13402 Cicer arietinum Ca_13402 I 0.894
chr2.CM0002.120.nc Lotus japonicus chr2.CM0002.120.nc I 0.903