POPTR_0018s13840 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0018s13840 T043922_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AMS
M09782_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AMS_01
0.911 0.646
SCRM
M09784_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.844 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s13840.1 bHLH 23 70

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMS Arabidopsis thaliana AT2G16910 D 0.911
SCRM Arabidopsis thaliana AT3G26744 D 0.844
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.844
estExt_fgenesh1_pg.C_1240017 Physcomitrella patens estExt_fgenesh1_pg.C_1240017 I 0.868
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.848
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.844
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.844
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.844
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.848
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.844
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.844
30147.m014419 Ricinus communis 30147.m014419 I 0.844
Pm024587 Prunus mume Pm024587 I 0.844
Pm020879 Prunus mume Pm020879 I 0.861
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.848
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.844
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.844
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I 0.868
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.868
mgf024029m Mimulus guttatus mgf024029m I 0.848
mgf019723m Mimulus guttatus mgf019723m I 0.848
mgf018455m Mimulus guttatus mgf018455m I 0.857
mgf016462m Mimulus guttatus mgf016462m I 0.844
mgf015974m Mimulus guttatus mgf015974m I 0.844
mgf012194m Mimulus guttatus mgf012194m I 0.844
gw1.90.96.1 Physcomitrella patens gw1.90.96.1 I 0.868
fgenesh1_pg.scaffold_1000274 Physcomitrella patens fgenesh1_pg.scaffold_1000274 I 0.848
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I 0.848
Pm016093 Prunus mume Pm016093 I 0.844
Cla023112 Citrullus lanatus Cla023112 I 0.844
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.844
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.844
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.844
Traes_6AS_66A98BA55 Triticum aestivum Traes_6AS_66A98BA55 I 0.844
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.848
Traes_4DS_7B0E8D459 Triticum aestivum Traes_4DS_7B0E8D459 I 0.874
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.844
TCM_017336 Theobroma cacao TCM_017336 I 0.844
TCM_014741 Theobroma cacao TCM_014741 I 0.844
TCM_006602 Theobroma cacao TCM_006602 I 0.861
Solyc06g068870.2 Solanum lycopersicum Solyc06g068870.2 I 0.874
TRIUR3_16046 Triticum urartu TRIUR3_16046 I 0.874
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.844
VIT_01s0127g00860 Vitis vinifera VIT_01s0127g00860 I 0.881
Cla016068 Citrullus lanatus Cla016068 I 0.848
Cla003283 Citrullus lanatus Cla003283 I 0.844
Cla002682 Citrullus lanatus Cla002682 I 0.844
Ca_23694 Cicer arietinum Ca_23694 I 0.911
Ca_23693 Cicer arietinum Ca_23693 I 0.911
Ca_05416 Cicer arietinum Ca_05416 I 0.911
Ca_01394 Cicer arietinum Ca_01394 I 0.844
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.844
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.844
VIT_03s0038g02540 Vitis vinifera VIT_03s0038g02540 I 0.840
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.844
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.844
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.844
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.868
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.881
SapurV1A.0140s0250 Salix purpurea SapurV1A.0140s0250 I 0.884
SapurV1A.0140s0240 Salix purpurea SapurV1A.0140s0240 I 0.860
SapurV1A.0001s2820 Salix purpurea SapurV1A.0001s2820 I 0.914
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.844
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.844
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.844
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.868
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.844
orange1.1g045155m.g Citrus sinensis orange1.1g045155m.g I 0.854
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.844
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.844
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.844
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.844
LjSGA_106153.1 Lotus japonicus LjSGA_106153.1 I 0.911
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.844
chr1.CM1880.50.nc Lotus japonicus chr1.CM1880.50.nc I 0.844
PK06940.1 Cannabis sativa PK06940.1 I 0.844
PK06841.1 Cannabis sativa PK06841.1 I 0.844
PK03241.1 Cannabis sativa PK03241.1 I 0.861
Thhalv10022620m.g Eutrema salsugineum Thhalv10022620m.g I 0.911
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.844
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.844
SapurV1A.3355s0020 Salix purpurea SapurV1A.3355s0020 I 0.884
SapurV1A.3355s0010 Salix purpurea SapurV1A.3355s0010 I 0.860
MDP0000662999 Malus domestica MDP0000662999 I 0.844
MDP0000405748 Malus domestica MDP0000405748 I 0.881
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.844
Eucgr.G01783 Eucalyptus grandis Eucgr.G01783 I 0.881
Ciclev10030105m.g Citrus clementina Ciclev10030105m.g I 0.854
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.844
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.844
Carubv10016240m.g Capsella rubella Carubv10016240m.g I 0.911
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.844
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.844
Cagra.10862s0002 Capsella grandiflora Cagra.10862s0002 I 0.911
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.844
Bostr.18351s0148 Boechera stricta Bostr.18351s0148 I 0.881
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.868
evm.TU.supercontig_20.95 Carica papaya evm.TU.supercontig_20.95 I 0.881
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.844
MDP0000304669 Malus domestica MDP0000304669 I 0.844
MDP0000247912 Malus domestica MDP0000247912 I 0.844
Lus10043199.g Linum usitatissimum Lus10043199.g I 0.874
Lus10032542.g Linum usitatissimum Lus10032542.g I 0.874
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.848
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.844
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.844
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.844
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.881
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I 0.851
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.844
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.844
MLOC_56814 Hordeum vulgare MLOC_56814 I 0.863
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.844
GLYMA20G24170 Glycine max GLYMA20G24170 I 0.911
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.844
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.844
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.871
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.844
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.844
GLYMA10G42830 Glycine max GLYMA10G42830 I 0.911
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.844
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.844
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.844
GRMZM2G119823 Zea mays GRMZM2G119823 I 0.847
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.844
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.844
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.868
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.844
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.844
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.844
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I 0.851
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.844
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.868
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.868
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I 0.851
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.844
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.844
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.844
AMS Arabidopsis lyrata fgenesh2_kg.3__3272__AT2G16910.1 I 0.881
Bo8g065080 Brassica oleracea Bo8g065080 I 0.844
Bo7g083870 Brassica oleracea Bo7g083870 I 0.844
Bo7g016210 Brassica oleracea Bo7g016210 I 0.911
Bo5g016510 Brassica oleracea Bo5g016510 I 0.844
Bo3g091780 Brassica oleracea Bo3g091780 I 0.911
Bo00285s440 Brassica oleracea Bo00285s440 I 0.844
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.844
BGIOSGA007229 Oryza indica BGIOSGA007229 I 0.848
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.844
SCRM2 Arabidopsis thaliana AT1G12860 I 0.844
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.868
Bo9g008020 Brassica oleracea Bo9g008020 I 0.844
Bra002004 Brassica rapa Bra002004 I 0.911
Bra013041 Brassica rapa Bra013041 I 0.911
F775_15875 Aegilops tauschii F775_15875 I 0.874
F775_14780 Aegilops tauschii F775_14780 I 0.844
BRADI4G17460 Brachypodium distachyon BRADI4G17460 I 0.874
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.868
BRADI3G01901 Brachypodium distachyon BRADI3G01901 I 0.842
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.844
Bra034246 Brassica rapa Bra034246 I 0.844
Bra032947 Brassica rapa Bra032947 I 0.844
Bra025226 Brassica rapa Bra025226 I 0.844
Bra019794 Brassica rapa Bra019794 I 0.844
Bra016749 Brassica rapa Bra016749 I 0.844
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.844
Si026212m.g Setaria italica Si026212m.g I 0.844
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.844
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I 0.861
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.844
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.844
POPTR_0018s13850 Populus trichocarpa POPTR_0018s13850 I 0.860
POPTR_0018s13830 Populus trichocarpa POPTR_0018s13830 I 0.884
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.844
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.844
AMS Populus trichocarpa POPTR_0009s13860 I 0.881
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I 0.871
PGSC0003DMG401028788 Solanum tuberosum PGSC0003DMG401028788 I 0.874
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.868
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.844
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.844
Si019518m.g Setaria italica Si019518m.g I 0.848
Si006500m.g Setaria italica Si006500m.g I 0.868
Si001874m.g Setaria italica Si001874m.g I 0.844
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.844
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.844
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.844
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.848
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.848
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.848
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.848
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.844
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.868
OS11G0523700 Oryza sativa OS11G0523700 I 0.844
TDR Oryza sativa OS02G0120500 I 0.848
OMERI02G00890 Oryza meridionalis OMERI02G00890 I 0.848
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.844
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.844
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I 0.848
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.844
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.844
OBART11G15260 Oryza barthii OBART11G15260 I 0.844
OBART02G01550 Oryza barthii OBART02G01550 I 0.848
OBART01G42600 Oryza barthii OBART01G42600 I 0.844
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.844
MTR_1g112680 Medicago truncatula MTR_1g112680 I 0.911
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.844
ONIVA02G01430 Oryza nivara ONIVA02G01430 I 0.848
OS01G0928000 Oryza sativa OS01G0928000 I 0.844
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.844
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I 0.848
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.844
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.844
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I 0.848
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.844
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.844
OPUNC02G01010 Oryza punctata OPUNC02G01010 I 0.848
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.844
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.844
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.844
GSMUA_Achr6G30900_001 Musa acuminata GSMUA_Achr6G30900_001 N 0.840