CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si001123m.g
(
Setaria italica
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Si001123m.g
T044669_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G42280
M06733_2.00
Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH130_col_a
0.858
0.860
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si001123m
bHLH
436
485
THPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDLAVDYIKELK
Links
Other
bHLH
family TFs
Other
Setaria italica
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G114873
Zea mays
GRMZM2G114873
I
0.914
Pavir.J01306
Panicum virgatum
Pavir.J01306
I
0.914
Sb03g042860
Sorghum bicolor
Sb03g042860
I
0.914
OS01G0900800
Oryza sativa
OS01G0900800
I
0.869
OB01G49420
Oryza brachyantha
OB01G49420
I
0.869
OBART01G40680
Oryza barthii
OBART01G40680
I
0.869
LPERR01G35240
Leersia perrieri
LPERR01G35240
I
0.869
OMERI01G37660
Oryza meridionalis
OMERI01G37660
I
0.869
OGLUM01G44860
Oryza glumaepatula
OGLUM01G44860
I
0.869
ORUFI01G44010
Oryza rufipogon
ORUFI01G44010
I
0.869
OLONG_004619
Oryza longistaminata
OLONG_004619
I
0.869
TRIUR3_33816
Triticum urartu
TRIUR3_33816
I
0.869
BGIOSGA004992
Oryza indica
BGIOSGA004992
I
0.869
Traes_3AL_B68C491B0
Triticum aestivum
Traes_3AL_B68C491B0
I
0.869
TRAES3BF135900010CFD_g
Triticum aestivum
TRAES3BF135900010CFD_g
I
0.869
OPUNC01G39450
Oryza punctata
OPUNC01G39450
I
0.869
BRADI2G57800
Brachypodium distachyon
BRADI2G57800
I
0.869
ORGLA01G0346300
Oryza glaberrima
ORGLA01G0346300
I
0.869
ONIVA01G45730
Oryza nivara
ONIVA01G45730
I
0.869
F775_24576
Aegilops tauschii
F775_24576
I
0.869
MLOC_20318
Hordeum vulgare
MLOC_20318
I
0.869
GSMUA_Achr1G27710_001
Musa acuminata
GSMUA_Achr1G27710_001
I
0.866
GSMUA_Achr8G32130_001
Musa acuminata
GSMUA_Achr8G32130_001
I
0.866
GSMUA_Achr8G01370_001
Musa acuminata
GSMUA_Achr8G01370_001
I
0.866
Carubv10023498m.g
Capsella rubella
Carubv10023498m.g
I
0.858
LPERR08G16800
Leersia perrieri
LPERR08G16800
I
0.858
SapurV1A.0009s0400
Salix purpurea
SapurV1A.0009s0400
I
0.858
scaffold_403077.1
Arabidopsis lyrata
scaffold_403077.1
I
0.858
30169.m006403
Ricinus communis
30169.m006403
I
0.858
AT2G42280
Arabidopsis thaliana
AT2G42280
D
0.858
Cagra.2636s0012
Capsella grandiflora
Cagra.2636s0012
I
0.858
MDP0000307685
Malus domestica
MDP0000307685
I
0.858
LPERR09G10800
Leersia perrieri
LPERR09G10800
I
0.858
VIT_06s0004g01740
Vitis vinifera
VIT_06s0004g01740
I
0.858
POPTR_0003s22290
Populus trichocarpa
POPTR_0003s22290
I
0.858
Lus10025518.g
Linum usitatissimum
Lus10025518.g
I
0.857
Bo5g007030
Brassica oleracea
Bo5g007030
I
0.857
Bo5g006980
Brassica oleracea
Bo5g006980
I
0.857
PDK_20s1546591g001
Phoenix dactylifera
PDK_20s1546591g001
I
0.857
Bra015456
Brassica rapa
Bra015456
I
0.857
Lus10026733.g
Linum usitatissimum
Lus10026733.g
I
0.857
Eucgr.A00213
Eucalyptus grandis
Eucgr.A00213
I
0.857
Ciclev10020681m.g
Citrus clementina
Ciclev10020681m.g
I
0.854
Ca_14007
Cicer arietinum
Ca_14007
I
0.854
Cagra.1671s0210
Capsella grandiflora
Cagra.1671s0210
I
0.854
Bostr.25219s0385
Boechera stricta
Bostr.25219s0385
I
0.854
Cucsa.094340
Cucumis sativus
Cucsa.094340
I
0.854
orange1.1g038558m.g
Citrus sinensis
orange1.1g038558m.g
I
0.854
Thhalv10008050m.g
Eutrema salsugineum
Thhalv10008050m.g
I
0.854
Carubv10009382m.g
Capsella rubella
Carubv10009382m.g
I
0.854
OPUNC04G14700
Oryza punctata
OPUNC04G14700
I
0.854
MLOC_12058
Hordeum vulgare
MLOC_12058
I
0.854
MTR_1g116790
Medicago truncatula
MTR_1g116790
I
0.854
OB04G24170
Oryza brachyantha
OB04G24170
I
0.854
OBART04G16900
Oryza barthii
OBART04G16900
I
0.854
LPERR04G13560
Leersia perrieri
LPERR04G13560
I
0.854
fgenesh2_kg.1__542__AT1G05805.1
Arabidopsis lyrata
fgenesh2_kg.1__542__AT1G05805.1
I
0.854
BGIOSGA016651
Oryza indica
BGIOSGA016651
I
0.854
BRADI3G48070
Brachypodium distachyon
BRADI3G48070
I
0.854
F775_26506
Aegilops tauschii
F775_26506
I
0.854
OGLUM04G16920
Oryza glumaepatula
OGLUM04G16920
I
0.854
OMERI04G14260
Oryza meridionalis
OMERI04G14260
I
0.854
Traes_6AL_9437F730F
Triticum aestivum
Traes_6AL_9437F730F
I
0.854
Traes_6BL_868408DFC
Triticum aestivum
Traes_6BL_868408DFC
I
0.854
Traes_6DL_62A15AED6
Triticum aestivum
Traes_6DL_62A15AED6
I
0.854
OS04G0489600
Oryza sativa
OS04G0489600
I
0.854
ORUFI04G18350
Oryza rufipogon
ORUFI04G18350
I
0.854
ONIVA04G15000
Oryza nivara
ONIVA04G15000
I
0.854
TRIUR3_16394
Triticum urartu
TRIUR3_16394
I
0.854
BHLH128
Arabidopsis thaliana
AT1G05805
I
0.854
ORGLA04G0140000
Oryza glaberrima
ORGLA04G0140000
I
0.854
Ca_07284
Cicer arietinum
Ca_07284
I
0.846