CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc10g009290.1
(
Solanum lycopersicum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Solyc10g009290.1
T045134_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH14
M09785_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT4G00870_01
0.871
0.812
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN
NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.852
0.875
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK
MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.852
0.875
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.852
0.854
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.852
0.854
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.852
0.833
BHLH13
M01698_2.00
Arabidopsis thaliana
MCACGTGV
BCACGTGK
PBM
Weirauch et al.(2014)
pTH7565
0.840
0.875
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc10g009290.1.1
bHLH
269
316
LNHVEAERQRREKLNHRFYALRSVVPHVTKMDKASLLSDAVSYINELK
Links
Other
bHLH
family TFs
Other
Solanum lycopersicum
TFs
149 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400005528
Solanum tuberosum
PGSC0003DMG400005528
I
0.914
AMTR_s00121p00026620
Amborella trichopoda
AMTR_s00121p00026620
I
0.894
PGSC0003DMG400012237
Solanum tuberosum
PGSC0003DMG400012237
I
0.884
PGSC0003DMG400005860
Solanum tuberosum
PGSC0003DMG400005860
I
0.884
Solyc08g083170.1
Solanum lycopersicum
Solyc08g083170.1
I
0.884
Solyc08g008600.2
Solanum lycopersicum
Solyc08g008600.2
I
0.884
Pm029399
Prunus mume
Pm029399
I
0.884
gene01894-v1.0-hybrid
Fragaria vesca
gene01894-v1.0-hybrid
I
0.884
MTR_8g024770
Medicago truncatula
MTR_8g024770
I
0.884
PRUPE_ppa005343mg
Prunus persica
PRUPE_ppa005343mg
I
0.884
MTR_8g024790
Medicago truncatula
MTR_8g024790
I
0.884
Solyc01g096370.2
Solanum lycopersicum
Solyc01g096370.2
I
0.871
VIT_02s0025g02610
Vitis vinifera
VIT_02s0025g02610
I
0.871
TCM_005064
Theobroma cacao
TCM_005064
I
0.871
PGSC0003DMG400018332
Solanum tuberosum
PGSC0003DMG400018332
I
0.871
MDP0000242554
Malus domestica
MDP0000242554
I
0.871
MDP0000729514
Malus domestica
MDP0000729514
I
0.871
VIT_15s0048g02820
Vitis vinifera
VIT_15s0048g02820
I
0.871
POPTR_0002s17750
Populus trichocarpa
POPTR_0002s17750
I
0.871
Eucgr.E00019
Eucalyptus grandis
Eucgr.E00019
I
0.871
PRUPE_ppa004680mg
Prunus persica
PRUPE_ppa004680mg
I
0.871
Gorai.008G128800
Gossypium raimondii
Gorai.008G128800
I
0.871
Bostr.7365s0026
Boechera stricta
Bostr.7365s0026
I
0.871
Aquca_037_00261
Aquilegia coerulea
Aquca_037_00261
I
0.871
mgf001993m
Mimulus guttatus
mgf001993m
I
0.871
Cagra.4923s0009
Capsella grandiflora
Cagra.4923s0009
I
0.871
Carubv10001082m.g
Capsella rubella
Carubv10001082m.g
I
0.871
Ciclev10019749m.g
Citrus clementina
Ciclev10019749m.g
I
0.871
evm.TU.supercontig_141.19
Carica papaya
evm.TU.supercontig_141.19
I
0.871
gene18651-v1.0-hybrid
Fragaria vesca
gene18651-v1.0-hybrid
I
0.871
Gorai.001G151700
Gossypium raimondii
Gorai.001G151700
I
0.871
27964.m000356
Ricinus communis
27964.m000356
I
0.871
27964.m000352
Ricinus communis
27964.m000352
I
0.871
MDP0000859492
Malus domestica
MDP0000859492
I
0.871
cassava29800.valid.m1
Manihot esculenta
cassava29800.valid.m1
I
0.871
cassava32651.m1
Manihot esculenta
cassava32651.m1
I
0.871
Gorai.004G149500
Gossypium raimondii
Gorai.004G149500
I
0.871
Gorai.007G111800
Gossypium raimondii
Gorai.007G111800
I
0.871
Al_scaffold_0006_3930
Arabidopsis lyrata
Al_scaffold_0006_3930
I
0.871
MDP0000224302
Malus domestica
MDP0000224302
I
0.871
GLYMA16G02320
Glycine max
GLYMA16G02320
I
0.871
GLYMA07G05740
Glycine max
GLYMA07G05740
I
0.871
MDP0000900024
Malus domestica
MDP0000900024
I
0.871
SapurV1A.0003s0670
Salix purpurea
SapurV1A.0003s0670
I
0.871
BHLH14
Arabidopsis thaliana
AT4G00870
D
0.871
orange1.1g046178m.g
Citrus sinensis
orange1.1g046178m.g
I
0.871
GSMUA_Achr1G18910_001
Musa acuminata
GSMUA_Achr1G18910_001
I
0.871
Ca_17603
Cicer arietinum
Ca_17603
I
0.870
Pavir.Ca00449
Panicum virgatum
Pavir.Ca00449
I
0.864
GLYMA02G09670
Glycine max
GLYMA02G09670
I
0.864
Sb09g008120
Sorghum bicolor
Sb09g008120
I
0.864
Si021549m.g
Setaria italica
Si021549m.g
I
0.864
Pavir.Cb01851
Panicum virgatum
Pavir.Cb01851
I
0.864
Cucsa.321840
Cucumis sativus
Cucsa.321840
I
0.861
Cla008954
Citrullus lanatus
Cla008954
I
0.861
Gorai.004G129600
Gossypium raimondii
Gorai.004G129600
I
0.860
Bo1g017990
Brassica oleracea
Bo1g017990
I
0.852
mgf002775m
Mimulus guttatus
mgf002775m
I
0.852
Bo7g075710
Brassica oleracea
Bo7g075710
I
0.852
Bo5g086990
Brassica oleracea
Bo5g086990
I
0.852
Bra010178
Brassica rapa
Bra010178
I
0.852
Bo9g065530
Brassica oleracea
Bo9g065530
I
0.852
Bo8g028850
Brassica oleracea
Bo8g028850
I
0.852
Bostr.28243s0060
Boechera stricta
Bostr.28243s0060
I
0.852
Bo9g066680
Brassica oleracea
Bo9g066680
I
0.852
Gorai.003G182100
Gossypium raimondii
Gorai.003G182100
I
0.852
Cagra.0751s0023
Capsella grandiflora
Cagra.0751s0023
I
0.852
Carubv10004392m.g
Capsella rubella
Carubv10004392m.g
I
0.852
Cagra.7865s0024
Capsella grandiflora
Cagra.7865s0024
I
0.852
Carubv10008586m.g
Capsella rubella
Carubv10008586m.g
I
0.852
MYC2
Arabidopsis thaliana
AT1G32640
D
0.852
chr2.CM0177.830.nc
Lotus japonicus
chr2.CM0177.830.nc
I
0.852
Carubv10028441m.g
Capsella rubella
Carubv10028441m.g
I
0.852
MYC4
Arabidopsis thaliana
AT4G17880
D
0.852
Cagra.3356s0080
Capsella grandiflora
Cagra.3356s0080
I
0.852
gene10501-v1.0-hybrid
Fragaria vesca
gene10501-v1.0-hybrid
I
0.852
Bostr.3359s0090
Boechera stricta
Bostr.3359s0090
I
0.852
Bo01130s010
Brassica oleracea
Bo01130s010
I
0.852
Bra013263
Brassica rapa
Bra013263
I
0.852
MYC3
Arabidopsis thaliana
AT5G46760
D
0.852
Bostr.30275s0255
Boechera stricta
Bostr.30275s0255
I
0.852
Thhalv10024688m.g
Eutrema salsugineum
Thhalv10024688m.g
I
0.852
ATMYC2
Arabidopsis lyrata
scaffold_103634.1
I
0.852
SapurV1A.0151s0080
Salix purpurea
SapurV1A.0151s0080
I
0.852
scaffold_800152.1
Arabidopsis lyrata
scaffold_800152.1
I
0.852
GLYMA01G12740
Glycine max
GLYMA01G12740
I
0.852
GLYMA01G02251
Glycine max
GLYMA01G02251
I
0.852
PRUPE_ppa002404mg
Prunus persica
PRUPE_ppa002404mg
I
0.852
POPTR_0003s09090
Populus trichocarpa
POPTR_0003s09090
I
0.852
PGSC0003DMG400001161
Solanum tuberosum
PGSC0003DMG400001161
I
0.852
MTR_5g030430
Medicago truncatula
MTR_5g030430
I
0.852
PGSC0003DMG400017535
Solanum tuberosum
PGSC0003DMG400017535
I
0.852
GLYMA09G33730
Glycine max
GLYMA09G33730
I
0.852
GLYMA08G36720
Glycine max
GLYMA08G36720
I
0.852
PK18474.1
Cannabis sativa
PK18474.1
D
0.852
Solyc08g076930.1
Solanum lycopersicum
Solyc08g076930.1
I
0.852
Ca_12352
Cicer arietinum
Ca_12352
I
0.852
Ca_11514
Cicer arietinum
Ca_11514
I
0.852
MDP0000029168
Malus domestica
MDP0000029168
I
0.852
Bra017527
Brassica rapa
Bra017527
I
0.852
Pm023237
Prunus mume
Pm023237
I
0.852
fgenesh2_kg.7__2520__AT4G17880.1
Arabidopsis lyrata
fgenesh2_kg.7__2520__AT4G17880.1
I
0.852
MDP0000136498
Malus domestica
MDP0000136498
I
0.852
Thhalv10007075m.g
Eutrema salsugineum
Thhalv10007075m.g
I
0.852
Bra017523
Brassica rapa
Bra017523
I
0.852
Bra024998
Brassica rapa
Bra024998
I
0.852
Thhalv10000808m.g
Eutrema salsugineum
Thhalv10000808m.g
I
0.852
MDP0000603546
Malus domestica
MDP0000603546
I
0.851
MDP0000160600
Malus domestica
MDP0000160600
I
0.851
PK23618.1
Cannabis sativa
PK23618.1
I
0.851
Cla006801
Citrullus lanatus
Cla006801
I
0.851
Cla006802
Citrullus lanatus
Cla006802
I
0.851
Bra024993
Brassica rapa
Bra024993
I
0.851
Cucsa.120830
Cucumis sativus
Cucsa.120830
I
0.851
SapurV1A.0059s0390
Salix purpurea
SapurV1A.0059s0390
I
0.849
GLYMA17G16720
Glycine max
GLYMA17G16720
I
0.849
GLYMA05G23530
Glycine max
GLYMA05G23530
I
0.849
POPTR_0003s14710
Populus trichocarpa
POPTR_0003s14710
I
0.849
cassava39612.m1
Manihot esculenta
cassava39612.m1
I
0.849
MTR_8g067280
Medicago truncatula
MTR_8g067280
I
0.849
Gorai.004G184800
Gossypium raimondii
Gorai.004G184800
I
0.849
cassava45234.m1
Manihot esculenta
cassava45234.m1
I
0.849
gene13705-v1.0-hybrid
Fragaria vesca
gene13705-v1.0-hybrid
I
0.849
Bra017520
Brassica rapa
Bra017520
I
0.849
PDK_20s1377121g004
Phoenix dactylifera
PDK_20s1377121g004
I
0.849
cassava45233.m1
Manihot esculenta
cassava45233.m1
I
0.849
cassava45188.m1
Manihot esculenta
cassava45188.m1
I
0.849
cassava40529.m1
Manihot esculenta
cassava40529.m1
I
0.849
Cla007989
Citrullus lanatus
Cla007989
I
0.847
Lus10005999.g
Linum usitatissimum
Lus10005999.g
I
0.847
GSMUA_Achr10G07470_001
Musa acuminata
GSMUA_Achr10G07470_001
I
0.847
MTR_4g097950
Medicago truncatula
MTR_4g097950
I
0.846
Ca_09378
Cicer arietinum
Ca_09378
I
0.846
Thhalv10007139m.g
Eutrema salsugineum
Thhalv10007139m.g
I
0.840
Bra033273
Brassica rapa
Bra033273
I
0.840
Bostr.5325s0049
Boechera stricta
Bostr.5325s0049
I
0.840
Bo5g002590
Brassica oleracea
Bo5g002590
I
0.840
Cagra.1968s0070
Capsella grandiflora
Cagra.1968s0070
I
0.840
BHLH13
Arabidopsis thaliana
AT1G01260
D
0.840
Thhalv10000853m.g
Eutrema salsugineum
Thhalv10000853m.g
I
0.840
fgenesh2_kg.1__101__AT1G01260.1
Arabidopsis lyrata
fgenesh2_kg.1__101__AT1G01260.1
I
0.840
GSMUA_Achr8G14720_001
Musa acuminata
GSMUA_Achr8G14720_001
I
0.840
GSMUA_Achr11G17840_001
Musa acuminata
GSMUA_Achr11G17840_001
I
0.840
GSMUA_Achr2G18140_001
Musa acuminata
GSMUA_Achr2G18140_001
I
0.840
GSMUA_AchrUn_randomG02900_001
Musa acuminata
GSMUA_AchrUn_randomG02900_001
I
0.840
Carubv10008640m.g
Capsella rubella
Carubv10008640m.g
I
0.840
SapurV1A.0162s0110
Salix purpurea
SapurV1A.0162s0110
I
0.840
POPTR_0014s09950
Populus trichocarpa
POPTR_0014s09950
I
0.840
GSMUA_Achr7G04720_001
Musa acuminata
GSMUA_Achr7G04720_001
I
0.840