hlh-1 (Caenorhabditis elegans)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 WBGene00001948 T046272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
hlh-1
M00743_2.00		 Caenorhabditis elegans
NNCACGTGYB
VRCACGTGNN		 PBM
DeMasi et al.(2011)
HLH-1_L13R		 (Direct) (Direct)
hlh-1
M00744_2.00		 Caenorhabditis elegans
NACASVTGHN
NDCABSTGTN		 PBM
DeMasi et al.(2011)
HLH-1_L13T		 (Direct) (Direct)
hlh-1
M00745_2.00		 Caenorhabditis elegans
NACASCTGYN
NRCAGSTGTN		 PBM
DeMasi et al.(2011)
HLH-1_L13V		 (Direct) (Direct)
hlh-1
M00746_2.00		 Caenorhabditis elegans
RACAGCTGNN
NNCAGCTGTY		 PBM
DeMasi et al.(2011)
HLH-1		 (Direct) (Direct)
hlh-1
M00929_2.00		 Caenorhabditis elegans
GACAGCTG
CAGCTGTC		 PBM
Grove et al.(2009)
HLH1		 (Direct) (Direct)
hlh-1
M08063_2.00		 Caenorhabditis elegans
VAACAGYTGNY
RNCARCTGTTB		 ChIP-seq
Mathelier et al.(2014)
MA0545.1		 (Direct) (Direct)
hlh-1
M09481_2.00		 Caenorhabditis elegans
NNRNCARNTGNY
RNCANYTGNYNN		 Misc
Heinz et al.(2010)
cElegans-Embryo-HLH1_modEncode		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.838 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00743_2.00 bHLH 156 207
M00744_2.00 bHLH 156 207
M00745_2.00 bHLH 156 207
M00746_2.00 bHLH 156 207
M00929_2.00 bHLH 156 207

DNA Binding Domains

Protein ID Domain From To Sequence
B0304.1a bHLH 152 203
B0304.1b bHLH 156 207
B0304.1c bHLH 156 207

Links

Other bHLH family TFs
Other Caenorhabditis elegans TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EEL_0000993601 Elaeophora elaphi EEL_0000993601 I 0.914
HCOI02168200 Haemonchus contortus HCOI02168200 I 0.914
nAv.1.0.1.g02052 Acanthocheilonema viteae nAv.1.0.1.g02052 I 0.914
DICVIV_08170 Dictyocaulus viviparus DICVIV_08170 I 0.914
ASU_01867 Ascaris suum ASU_01867 I 0.914
WUBG_05117 Wuchereria bancrofti WUBG_05117 I 0.914
ASIM_0001156501 Anisakis simplex ASIM_0001156501 I 0.914
nDi.2.2.2.g00288 Dirofilaria immitis nDi.2.2.2.g00288 I 0.914
NECAME_14163 Necator americanus NECAME_14163 I 0.914
TELCIR_07640 Teladorsagia circumcincta TELCIR_07640 I 0.914
TELCIR_14945 Teladorsagia circumcincta TELCIR_14945 I 0.914
TCLT_0000019401 Thelazia callipaeda TCLT_0000019401 I 0.914
OFLC_0000064301 Onchocerca flexuosa OFLC_0000064301 I 0.914
nLs.2.1.2.g06915 Litomosoides sigmodontis nLs.2.1.2.g06915 I 0.914
nOo.2.0.1.g00910 Onchocerca ochengi nOo.2.0.1.g00910 I 0.914
ALUE_0000745301 Ascaris lumbricoides ALUE_0000745301 I 0.914
ANCCEY_00328 Ancylostoma ceylanicum ANCCEY_00328 I 0.914
CBN11281 Caenorhabditis brenneri CBN11281 I 0.914
ACOC_0000253201 Angiostrongylus costaricensis ACOC_0000253201 I 0.914
LOAG_16988 Loa loa LOAG_16988 I 0.914
CRE17301 Caenorhabditis remanei CRE17301 I 0.914
WBGene00247572 Onchocerca volvulus WBGene00247572 I 0.914
CBG13470 Caenorhabditis briggsae CBG13470 I 0.914
Bm1750 Brugia malayi Bm1750 I 0.914
CJA13327 Caenorhabditis japonica CJA13327 I 0.914
EVEC_0000720901 Enterobius vermicularis EVEC_0000720901 I 0.884
SMUV_0000995901 Syphacia muris SMUV_0000995901 I 0.884
scaffold6-EXSNAP2012.144 Pristionchus exspectatus scaffold6-EXSNAP2012.144 I 0.863
Ppa-hlh-1 Pristionchus pacificus PPA08246 I 0.863
BXY_0489100 Bursaphelenchus xylophilus BXY_0489100 I 0.863
Ocbimv22002759m.g Octopus bimaculoides Ocbimv22002759m.g I 0.855
CGI_10007380 Crassostrea gigas CGI_10007380 I 0.855
CapteG36721 Capitella teleta CapteG36721 I 0.855
LDEC009949 Leptinotarsa decemlineata LDEC009949 I 0.846
YQE_11476 Dendroctonus ponderosae YQE_11476 I 0.846
TC015855 Tribolium castaneum TC015855 I 0.846