Alligator_sinensis_CCG005115.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG005115.1 T046637_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TWIST1
M08052_2.00
Homo sapiens
NNNCCAGATGTNN

NNACATCTGGNNN
ChIP-seq
Mathelier et al.(2014)
MA1123.1
0.894 0.942
TWIST1
M08722_2.00
Homo sapiens
WAATBRRWWMCAGATGB

VCATCTGKWWYYVATTW
Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A
0.894 0.942
Twist1
M08766_2.00
Mus musculus
WAATNRRWWMCAKMTGB

VCAKMTGKWWYYNATTW
Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B
0.894 0.942
TWIST1
M09831_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6_01
0.894 0.942
TWIST1
M09832_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6
0.894 0.942
Twist2
M01718_2.00
Mus musculus
NACATATGKN

NMCATATGTN
PBM
Weirauch et al.(2014)
pTH5033
0.894 0.923
twi
M03605_2.00
Drosophila melanogaster
MACACRTGKB

VMCAYGTGTK
SELEX
Nitta et al.(2015)
twi_1
0.879 0.865
twi
M03606_2.00
Drosophila melanogaster
MNDCMYRHCGVD

HBCGDYRKGHNK
SELEX
Nitta et al.(2015)
twi_2
0.879 0.865
twi
M05955_2.00
Drosophila melanogaster
VCCAGATGTB

VACATCTGGB
B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900
0.879 0.865
twi
M05956_2.00
Drosophila melanogaster
NAACAYRTGSNV

BNSCAYRTGTTN
B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900
0.879 0.865
twi
M07538_2.00
Drosophila melanogaster
NAACAYRTGSNV

BNSCAYRTGTTN
DNaseI footprinting
Mathelier et al.(2014)
MA0249.1
0.879 0.865
twi
M09657_2.00
Drosophila melanogaster
AACAKVTGBBVD

HBVVCABMTGTT
Misc
Kulakovskiy et al.(2009)
twi
0.879 0.865
twi
M09892_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TWI_Q6
0.879 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005115.1 bHLH 68 119

Links

Other bHLH family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action