TF Information

Alligator_sinensis_CCG017419.1 *(Alligator sinensis)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00010 (HLH)	IPR001092	Alligator_sinensis_CCG017419.1	T046673_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Myf5 M09463_2.00	Mus musculus	NRRCAGCTGY	RCAGCTGYYN	Misc Heinz et al.(2010) GM-Myf5_GSE24852	0.884	0.981
MYF5 M09821_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MYF5_Q6	0.884	0.981
Myf6 M00120_2.00	Mus musculus	NCRNNTGNY	RNCANNYGN	PBM Badis et al.(2009) Myf6_3824	0.872	0.827
Myf6 M01742_2.00	Mus musculus	RACAGHTGH	DCADCTGTY	PBM Weirauch et al.(2014) pTH5099	0.872	0.827
MYF6 M02780_2.00	Homo sapiens	AACARCTGTY	RACAGYTGTT	SELEX Jolma et al.(2013) MYF6_1	0.872	0.827
MYF6 M04084_2.00	Homo sapiens	BRHCASSTGWCR	YGWCASSTGDYV	SELEX Yin et al.(2017) MYF6_eDBD_HT-SELEX_1	0.872	0.827
MYF6 M04085_2.00	Homo sapiens	NRACASSTGWYV	BRWCASSTGTYN	SELEX Yin et al.(2017) MYF6_eDBD_HT-SELEX_2	0.872	0.827
MYF6 M05831_2.00	Homo sapiens	BRACAKNTGNY	RNCANMTGTYV	SMiLE-seq Isakova et al.(2017) MYF6	0.872	0.827
MYF6 M08717_2.00	Homo sapiens	CASCTGC	GCAGSTG	Misc Kulakovskiy et al.(2013) MYF6_HUMAN.H11MO.0.C	0.872	0.827
Myf6 M08767_2.00	Mus musculus	CASCTGC	GCAGSTG	Misc Kulakovskiy et al.(2013) MYF6_MOUSE.H11MO.0.C	0.872	0.827
MYF6 M09820_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MRF4_Q3	0.872	0.827
MYF6 M04086_2.00	Homo sapiens	BRHCASSTGWCR	YGWCASSTGDYV	SELEX Yin et al.(2017) MYF6_eDBD_Methyl-HT-SELEX_1	0.872	0.827
MYF6 M04087_2.00	Homo sapiens	BAACASSTGWYV	BRWCASSTGTTV	SELEX Yin et al.(2017) MYF6_eDBD_Methyl-HT-SELEX_2	0.872	0.827
MYOG M04098_2.00	Homo sapiens	BRACAGCTGWCR	YGWCAGCTGTYV	SELEX Yin et al.(2017) MYOG_eDBD_HT-SELEX_1	0.842	0.788
MYOG M04099_2.00	Homo sapiens	NAACAGCTGTYN	NRACAGCTGTTN	SELEX Yin et al.(2017) MYOG_eDBD_HT-SELEX_2	0.842	0.788
MYOG M04102_2.00	Homo sapiens	NRACARCTGWCR	YGWCAGYTGTYN	SELEX Yin et al.(2017) MYOG_FL_HT-SELEX_1	0.842	0.788
MYOG M04103_2.00	Homo sapiens	NAACARYTGTYN	NRACARYTGTTN	SELEX Yin et al.(2017) MYOG_FL_HT-SELEX_2	0.842	0.788
Myog M08061_2.00	Mus musculus	RRCAGCTGVNN	NNBCAGCTGYY	ChIP-seq Mathelier et al.(2014) MA0500.1	0.842	0.788
MYOG M08721_2.00	Homo sapiens	BHVCAGCTGYYNB	VNRRCAGCTGBDV	Misc Kulakovskiy et al.(2013) MYOG_HUMAN.H11MO.0.B	0.842	0.788
Myog M08755_2.00	Mus musculus	BHVCAGCTGYYNB	VNRRCAGCTGBDV	Misc Kulakovskiy et al.(2013) MYOG_MOUSE.H11MO.0.A	0.842	0.788
Myog M09469_2.00	Mus musculus	RACAGCTG	CAGCTGTY	Misc Heinz et al.(2010) C2C12-MyoG_GSE36024	0.842	0.788
MYOG M09829_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MYOGENIN_Q6_01	0.842	0.788
MYOG M09830_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MYOGENIN_Q6	0.842	0.788
MYOG M04100_2.00	Homo sapiens	BRACAGCTGTCR	YGACAGCTGTYV	SELEX Yin et al.(2017) MYOG_eDBD_Methyl-HT-SELEX_1	0.842	0.788
MYOG M04101_2.00	Homo sapiens	BAACAGCTGTYV	BRACAGCTGTTV	SELEX Yin et al.(2017) MYOG_eDBD_Methyl-HT-SELEX_2	0.842	0.788
MYOG M04104_2.00	Homo sapiens	BRACAGCTGTCR	YGACAGCTGTYV	SELEX Yin et al.(2017) MYOG_FL_Methyl-HT-SELEX_1	0.842	0.788
MYOG M04105_2.00	Homo sapiens	NAACAGCTGTYN	NRACAGCTGTTN	SELEX Yin et al.(2017) MYOG_FL_Methyl-HT-SELEX_2	0.842	0.788
MYOD1 M04116_2.00	Homo sapiens	BAACASSTGNYV	BRNCASSTGTTV	SELEX Yin et al.(2017) MYOD1_eDBD_HT-SELEX_1	0.840	0.904
MYOD1 M04117_2.00	Homo sapiens	BRVCASMTGDCG	CGHCAKSTGBYV	SELEX Yin et al.(2017) MYOD1_eDBD_HT-SELEX_2	0.840	0.904
MYOD1 M04120_2.00	Homo sapiens	NAACASSTGNYV	BRNCASSTGTTN	SELEX Yin et al.(2017) MYOD1_FL_HT-SELEX_1	0.840	0.904
MYOD1 M04121_2.00	Homo sapiens	BRMCASCTGDCR	YGHCAGSTGKYV	SELEX Yin et al.(2017) MYOD1_FL_HT-SELEX_2	0.840	0.904
Myod1 M08060_2.00	Mus musculus	NVNRRCAGSTGBN	NVCASCTGYYNBN	ChIP-seq Mathelier et al.(2014) MA0499.1	0.840	0.904
MYOD1 M08724_2.00	Homo sapiens	NVNNRNRRCAGCTGN	NCAGCTGYYNYNNBN	Misc Kulakovskiy et al.(2013) MYOD1_HUMAN.H11MO.0.A	0.840	0.904
Myod1 M08745_2.00	Mus musculus	NVNRRNRRCAGSTGB	VCASCTGYYNYYNBN	Misc Kulakovskiy et al.(2013) MYOD1_MOUSE.H11MO.0.A	0.840	0.904
MYOD1 M09838_2.00	Homo sapiens	HRVCACCTGHBB	VVDCAGGTGBYD	Transfac Matys et al.(2006) V$MYOD_01	0.840	0.904
MYOD1 M09839_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MYOD_Q6_02	0.840	0.904
MYOD1 M09840_2.00	Homo sapiens	NVCABCTGNY	RNCAGVTGBN	Transfac Matys et al.(2006) V$MYOD_Q6	0.840	0.904
MYOD1 M04118_2.00	Homo sapiens	BAACANVTGTYV	BRACABNTGTTV	SELEX Yin et al.(2017) MYOD1_eDBD_Methyl-HT-SELEX_1	0.840	0.904
MYOD1 M04119_2.00	Homo sapiens	BRRCASSTGDCR	YGHCASSTGYYV	SELEX Yin et al.(2017) MYOD1_eDBD_Methyl-HT-SELEX_2	0.840	0.904
MYOD1 M04122_2.00	Homo sapiens	NAMCASSTGBYV	BRVCASSTGKTN	SELEX Yin et al.(2017) MYOD1_FL_Methyl-HT-SELEX_1	0.840	0.904
MYOD1 M04123_2.00	Homo sapiens	BRMCASVTGNCR	YGNCABSTGKYV	SELEX Yin et al.(2017) MYOD1_FL_Methyl-HT-SELEX_2	0.840	0.904
For this family, TFs with SR scores > 0.838* will likely have a similar motif*