Brh_R007211 (Buceros rhinoceros)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Brh_R007211 T046716_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN

NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.914 1.000
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN

NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.914 1.000
TCF3
M09791_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.914 1.000
TCF3
M09792_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.914 1.000
TCF3
M09793_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.914 1.000
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB

VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.914 1.000
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN

NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.914 1.000
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS

SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886 0.942
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN

NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886 0.942
Tcf3
M09886_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886 0.942
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB

VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.886 0.923
TCF12
M04137_2.00
Homo sapiens
VCACSTGB

VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.886 0.923
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN

NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.886 0.923
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB

VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.886 0.923
TCF12
M07806_2.00
Homo sapiens
VCASCTGB

VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.886 0.923
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH

DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.886 0.923
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH

DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.886 0.923
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB

VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.886 0.923
TCF12
M09858_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.886 0.923
TCF12
M09859_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.886 0.923
TCF12
M09860_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.886 0.923
TCF12
M09861_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.886 0.923
TCF12
M09862_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.886 0.923
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN

NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.886 0.923
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN

NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.886 0.846
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB

VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.886 0.846
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB

VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.886 0.846
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN

NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.884 0.885
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN

NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.884 0.885
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN

NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.884 0.885
TCF4
M02728_2.00
Homo sapiens
RCACCTG

CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.884 0.885
TCF4
M04214_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.884 0.885
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB

VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.884 0.885
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN

NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.884 0.885
TCF4
M04215_2.00
Homo sapiens
VCACCTGN

NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R007211 bHLH 376 429

Links

Other bHLH family TFs
Other Buceros rhinoceros TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK04914.1 Cannabis sativa PK04914.1 D 0.000
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.000
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.000
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.000
mgf008067m Mimulus guttatus mgf008067m I 0.000
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.000
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.000
29815.m000504 Ricinus communis 29815.m000504 I 0.000
28077.m000081 Ricinus communis 28077.m000081 I 0.000
Pm026265 Prunus mume Pm026265 I 0.000
Cla018015 Citrullus lanatus Cla018015 I 0.000
Ca_20148 Cicer arietinum Ca_20148 I 0.000
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.000
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.000
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.000
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.000
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.000
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.000
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.000
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.000
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.000
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.000
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.000
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.000
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.000
MDP0000415733 Malus domestica MDP0000415733 I 0.000
MDP0000399495 Malus domestica MDP0000399495 I 0.000
MDP0000201016 Malus domestica MDP0000201016 I 0.000
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.000
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.000
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.000
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.000
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.000
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.000
TCM_043551 Theobroma cacao TCM_043551 I 0.000
TCM_022397 Theobroma cacao TCM_022397 I 0.000
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.000
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.000
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.000
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.000
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.000
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.000
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.000
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.000
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.000
F775_31501 Aegilops tauschii F775_31501 I 0.000
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.000
Bra029812 Brassica rapa Bra029812 I 0.000
Bo5g137800 Brassica oleracea Bo5g137800 I 0.000
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.000
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.000
OB04G18670 Oryza brachyantha OB04G18670 I 0.000
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.000
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.000
Si009787m.g Setaria italica Si009787m.g I 0.000
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.000
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.000
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.000
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.000
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.000
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.000
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.000
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.000
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.000
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.000
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.000
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.000
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.000