Cla018818 (Citrullus lanatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cla018818 T046997_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.872 0.902
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.872 0.902
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.872 0.902
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.872 0.902
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.870 0.863
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.852 0.765
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.852 0.765
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.852 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018818 bHLH 266 321

Links

Other bHLH family TFs
Other Citrullus lanatus TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.902
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.890
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.872
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.872
mgf005849m Mimulus guttatus mgf005849m I 0.872
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.872
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.872
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.872
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.872
TCM_014392 Theobroma cacao TCM_014392 I 0.872
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.872
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.872
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.872
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.872
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.872
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.872
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.872
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.872
mgf001137m Mimulus guttatus mgf001137m I 0.872
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.872
Bo3g004690 Brassica oleracea Bo3g004690 I 0.872
Bo5g020460 Brassica oleracea Bo5g020460 I 0.872
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.872
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.872
PK10562.1 Cannabis sativa PK10562.1 I 0.872
BIM1 Arabidopsis thaliana AT5G08130 D 0.872
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.872
Bo9g174770 Brassica oleracea Bo9g174770 I 0.872
Bo2g161110 Brassica oleracea Bo2g161110 I 0.872
Bra009322 Brassica rapa Bra009322 I 0.872
Bra029354 Brassica rapa Bra029354 I 0.872
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.872
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.872
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.872
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.870
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.870
OS08G0490000 Oryza sativa OS08G0490000 I 0.870
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.870
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.870
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.870
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.870
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.870
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.870
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.870
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.870
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.870
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.870
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.870
Si013622m.g Setaria italica Si013622m.g I 0.870
Bra005969 Brassica rapa Bra005969 I 0.870
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.870
OB08G25940 Oryza brachyantha OB08G25940 I 0.870
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.870
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.870
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.870
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.861
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.861
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.860
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.859
OB02G38020 Oryza brachyantha OB02G38020 I 0.858
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.858
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.858
Si016505m.g Setaria italica Si016505m.g I 0.858
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.858
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.858
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.858
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.858
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.858
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.858
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.858
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.858
OS02G0726700 Oryza sativa OS02G0726700 I 0.858
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.852
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.852
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.852
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.852
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.852
mgf013208m Mimulus guttatus mgf013208m I 0.852
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.852
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.852
BIM2 Arabidopsis thaliana AT1G69010 D 0.852
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.852
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.852
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.852
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.852
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.852
PK00238.1 Cannabis sativa PK00238.1 I 0.852
mgf011829m Mimulus guttatus mgf011829m I 0.852
Bra038332 Brassica rapa Bra038332 I 0.852
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.852
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.852
Bo6g108530 Brassica oleracea Bo6g108530 I 0.852
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.852
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.852
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.852
MDP0000261293 Malus domestica MDP0000261293 I 0.852
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.852
Bo2g062560 Brassica oleracea Bo2g062560 I 0.852
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.852
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.852
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.852
Bra004355 Brassica rapa Bra004355 I 0.852
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.852
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.852
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.852
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.852
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.852
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.852
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.852
TCM_019015 Theobroma cacao TCM_019015 I 0.852
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.852
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.852
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.852
TCM_011433 Theobroma cacao TCM_011433 I 0.852
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.852
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.852
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.852
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.852
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.852
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.852
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.852
30138.m003899 Ricinus communis 30138.m003899 I 0.852
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.852
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.852
Cla022382 Citrullus lanatus Cla022382 I 0.852
29790.m000843 Ricinus communis 29790.m000843 I 0.852
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.852
Ca_22043 Cicer arietinum Ca_22043 I 0.852
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.852
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.850
PK01364.1 Cannabis sativa PK01364.1 I 0.850
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.850
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.848
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.848
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.848
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.848
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.848
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.848
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.848
30138.m003913 Ricinus communis 30138.m003913 I 0.848
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.848
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.846
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.843
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.843
OS09G0475400 Oryza sativa OS09G0475400 I 0.843
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.843
OBART09G13850 Oryza barthii OBART09G13850 I 0.843
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.843
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.843
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.843
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.843
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.843
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.843
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.843
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.843
Si029604m.g Setaria italica Si029604m.g I 0.843
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.843
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.843
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.843
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.843
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.843
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.843
F775_23096 Aegilops tauschii F775_23096 I 0.843
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.843
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.841
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.839