Cmyd_10006705 (Chelonia mydas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cmyd_10006705 T047062_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN

NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.858 0.920
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB

VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.858 0.920
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB

VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.858 0.920
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB

VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.858 0.840
TCF12
M04137_2.00
Homo sapiens
VCACSTGB

VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.858 0.840
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN

NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.858 0.840
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB

VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.858 0.840
TCF12
M07806_2.00
Homo sapiens
VCASCTGB

VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.858 0.840
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH

DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.858 0.840
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH

DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.858 0.840
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB

VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.858 0.840
TCF12
M09858_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.858 0.840
TCF12
M09859_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.858 0.840
TCF12
M09860_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.858 0.840
TCF12
M09861_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.858 0.840
TCF12
M09862_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.858 0.840
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN

NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.858 0.840
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN

NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.855 0.840
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN

NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.855 0.840
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN

NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.855 0.840
TCF4
M02728_2.00
Homo sapiens
RCACCTG

CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.855 0.840
TCF4
M04214_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.855 0.840
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB

VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.855 0.840
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN

NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.855 0.840
TCF4
M04215_2.00
Homo sapiens
VCACCTGN

NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.855 0.840
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006705 bHLH 1 52

Links

Other bHLH family TFs
Other Chelonia mydas TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCF3 Gallus gallus ENSGALG00000001093 I 0.914
Ogr01317 Ophisaurus gracilis Ogr01317 I 0.914
TCF3 Meleagris gallopavo ENSMGAG00000002388 I 0.914
ENSACAG00000027602 Anolis carolinensis ENSACAG00000027602 I 0.914
tcf3 Xenopus tropicalis XB-GENE-478265 I 0.912
TCF3 Felis catus ENSFCAG00000023514 I 0.888
TCF3 Callithrix jacchus ENSCJAG00000004642 I 0.888
ENSTRUG00000002569 Takifugu rubripes ENSTRUG00000002569 I 0.888
TCF3 Gorilla gorilla ENSGGOG00000003667 I 0.888
tcf12 Takifugu rubripes ENSTRUG00000017855 I 0.888
SNAPOd2T00003591001 Oikopleura dioica SNAPOd2T00003591001 I 0.888
ENSPANG00000016063 Papio anubis ENSPANG00000016063 I 0.888
TCF3 Homo sapiens ENSG00000071564 D 0.888
tcf12 Tetraodon nigroviridis ENSTNIG00000009326 I 0.888
ENSTNIG00000010330 Tetraodon nigroviridis ENSTNIG00000010330 I 0.888
TCF3 Macaca mulatta ENSMMUG00000009017 I 0.888
TTRE_0000494001 Trichuris trichiura TTRE_0000494001 I 0.860
D918_01871 Trichuris suis D918_01871 I 0.860
TMUE_s0043005200 Trichuris muris TMUE_s0043005200 I 0.860
ML223014a Mnemiopsis leidyi ML223014a N 0.860
ENSOARG00000020872 Ovis aries ENSOARG00000020872 I 0.858
TCF12 Oryctolagus cuniculus ENSOCUG00000017812 I 0.858
TCF12 Otolemur garnettii ENSOGAG00000006485 I 0.858
ENSXMAG00000014303 Xiphophorus maculatus ENSXMAG00000014303 I 0.858
ENSONIG00000005794 Oreochromis niloticus ENSONIG00000005794 I 0.858
Tcf12 Mus musculus ENSMUSG00000032228 D 0.858
Afo_R014990 Aptenodytes forsteri Afo_R014990 I 0.858
TCF12 Monodelphis domestica ENSMODG00000008311 I 0.858
Alligator_sinensis_CCG017304.1 Alligator sinensis Alligator_sinensis_CCG017304.1 I 0.858
TCF12 Macaca mulatta ENSMMUG00000004091 I 0.858
ENSMPUG00000004438 Mustela putorius furo ENSMPUG00000004438 I 0.858
Tcf3 Mus musculus ENSMUSG00000020167 D 0.858
tetur02g08700 Tetranychus urticae tetur02g08700 I 0.858
ENSNLEG00000006707 Nomascus leucogenys ENSNLEG00000006707 I 0.858
Aan_R011985 Calypte anna Aan_R011985 I 0.858
ENSONIG00000008337 Oreochromis niloticus ENSONIG00000008337 I 0.858
TCF12 Ornithorhynchus anatinus ENSOANG00000009462 I 0.858
ENSPANG00000017265 Papio anubis ENSPANG00000017265 I 0.858
Tcf12 Rattus norvegicus ENSRNOG00000057754 I 0.858
Tcf3 Rattus norvegicus ENSRNOG00000051499 I 0.858
TCF12 Pteropus vampyrus ENSPVAG00000006184 I 0.858
TCF12 Takifugu rubripes ENSTRUG00000008110 I 0.858
TCF12 Sorex araneus ENSSARG00000013798 I 0.858
ENSTNIG00000013705 Tetraodon nigroviridis ENSTNIG00000013705 I 0.858
TCF12 Tupaia belangeri ENSTBEG00000002192 I 0.858
ENSSTOG00000001523 Ictidomys tridecemlineatus ENSSTOG00000001523 I 0.858
ENSSHAG00000015935 Sarcophilus harrisii ENSSHAG00000015935 I 0.858
TCF12 Pan troglodytes ENSPTRG00000007109 I 0.858
ENSTSYG00000009264 Tarsius syrichta ENSTSYG00000009264 I 0.858
TCF12 Myotis lucifugus ENSMLUG00000006205 I 0.858
TCF12 Vicugna pacos ENSVPAG00000006545 I 0.858
tcf12 Oryzias latipes ENSORLG00000008508 I 0.858
ENSPFOG00000004140 Poecilia formosa ENSPFOG00000004140 I 0.858
ENSPFOG00000024249 Poecilia formosa ENSPFOG00000024249 I 0.858
ENSPSIG00000011880 Pelodiscus sinensis ENSPSIG00000011880 I 0.858
ENSPPYG00000006505 Pongo abelii ENSPPYG00000006505 I 0.858
TCF12 Tursiops truncatus ENSTTRG00000010817 I 0.858
TCF12 Oryzias latipes ENSORLG00000005330 I 0.858
TCF12 Microcebus murinus ENSMICG00000009110 I 0.858
Pvit_17395 Pogona vitticeps Pvit_17395 I 0.858
TCF12 Equus caballus ENSECAG00000011678 I 0.858
TCF3 Equus caballus ENSECAG00000000623 I 0.858
Sakowv30044282m.g Saccoglossus kowalevskii Sakowv30044282m.g I 0.858
TCF12 Erinaceus europaeus ENSEEUG00000002182 I 0.858
ENSFALG00000012146 Ficedula albicollis ENSFALG00000012146 I 0.858
TCF12 Homo sapiens ENSG00000140262 D 0.858
TCF12 Felis catus ENSFCAG00000031674 I 0.858
Ogr11405 Ophisaurus gracilis Ogr11405 I 0.858
ENSDNOG00000042880 Dasypus novemcinctus ENSDNOG00000042880 I 0.858
tcf12 Danio rerio ENSDARG00000004714 I 0.858
tcf12.L Xenopus laevis XB-GENE-5799717 I 0.858
TCF3 Bos taurus ENSBTAG00000008695 I 0.858
TCF12 Bos taurus ENSBTAG00000002586 I 0.858
ENSAMXG00000014804 Astyanax mexicanus ENSAMXG00000014804 I 0.858
tcf12 Xenopus tropicalis XB-GENE-5799694 I 0.858
TCF12 Canis familiaris ENSCAFG00000016200 I 0.858
ENSCSAG00000011901 Chlorocebus sabaeus ENSCSAG00000011901 I 0.858
TCF12 Cavia porcellus ENSCPOG00000009153 I 0.858
TCF12 Choloepus hoffmanni ENSCHOG00000003168 I 0.858
tcf12 Gasterosteus aculeatus ENSGACG00000015831 I 0.858
TCF12 Gasterosteus aculeatus ENSGACG00000006101 I 0.858
Gfo_R004309 Geospiza fortis Gfo_R004309 I 0.858
Myotis_brandtii_Tcf12_10010436 Myotis brandtii Myotis_brandtii_Tcf12_10010436 I 0.858
ENSBTAP00000048638-D1 Bos grunniens ENSBTAP00000048638-D1 I 0.858
ENSLOCG00000013539 Lepisosteus oculatus ENSLOCG00000013539 I 0.858
ENSP00000331057 Macaca fascicularis ENSP00000331057 I 0.858
TCF12 Loxodonta africana ENSLAFG00000010546 I 0.858
ENSLACG00000014145 Latimeria chalumnae ENSLACG00000014145 I 0.858
TCF12 Anolis carolinensis ENSACAG00000014277 I 0.858
TCF3 Loxodonta africana ENSLAFG00000026277 I 0.858
TCF12 Taeniopygia guttata ENSTGUG00000006270 I 0.858
ENSMGAG00000005667 Meleagris gallopavo ENSMGAG00000005667 I 0.858
TCF12 Gallus gallus ENSGALG00000004304 I 0.858
ENSAMEG00000010612 Ailuropoda melanoleuca ENSAMEG00000010612 I 0.858
TCF12 Gorilla gorilla ENSGGOG00000008166 I 0.858
tcf3a Gasterosteus aculeatus ENSGACG00000015282 I 0.856
ENSXMAG00000019314 Xiphophorus maculatus ENSXMAG00000019314 N 0.856
ENSONIG00000010206 Oreochromis niloticus ENSONIG00000010206 I 0.856
Afo_R000660 Aptenodytes forsteri Afo_R000660 I 0.855
tcf4.S Xenopus laevis XB-GENE-1011632 I 0.855
Alligator_sinensis_CCG017823.1 Alligator sinensis Alligator_sinensis_CCG017823.1 I 0.855
SMAR008523 Strigamia maritima SMAR008523 I 0.855
Myotis_brandtii_Tcf4_10017301 Myotis brandtii Myotis_brandtii_Tcf4_10017301 I 0.855
Ogr02020 Ophisaurus gracilis Ogr02020 I 0.855
Cmyd_10020160 Chelonia mydas Cmyd_10020160 I 0.855
ENSXMAG00000011822 Xiphophorus maculatus ENSXMAG00000011822 I 0.855
TCF4 Tursiops truncatus ENSTTRG00000011542 I 0.855
Pvit_19114 Pogona vitticeps Pvit_19114 I 0.855
ENSP00000381382-D1 Bos grunniens ENSP00000381382-D1 I 0.855
ENSP00000381382 Macaca fascicularis ENSP00000381382 I 0.855
ENSTSYG00000009542 Tarsius syrichta ENSTSYG00000009542 I 0.855
tcf4 Xenopus tropicalis XB-GENE-1011628 I 0.855
ENSOGAG00000005735 Otolemur garnettii ENSOGAG00000005735 I 0.855
TCF4 Gorilla gorilla ENSGGOG00000016297 I 0.855
ENSGACG00000000628 Gasterosteus aculeatus ENSGACG00000000628 I 0.855
TCF4 Homo sapiens ENSG00000196628 D 0.855
TCF4 Felis catus ENSFCAG00000014682 I 0.855
ENSGMOG00000015710 Gadus morhua ENSGMOG00000015710 I 0.855
ENSGMOG00000018104 Gadus morhua ENSGMOG00000018104 I 0.855
ENSMEUG00000003794 Macropus eugenii ENSMEUG00000003794 I 0.855
ENSLOCG00000003538 Lepisosteus oculatus ENSLOCG00000003538 I 0.855
TCF4 Loxodonta africana ENSLAFG00000013449 I 0.855
ENSLACG00000003485 Latimeria chalumnae ENSLACG00000003485 I 0.855
TCF4 Erinaceus europaeus ENSEEUG00000000134 I 0.855
TCF4 Equus caballus ENSECAG00000017265 I 0.855
TCF4 Bos taurus ENSBTAG00000016462 I 0.855
ENSAPLG00000011135 Anas platyrhynchos ENSAPLG00000011135 I 0.855
ENSAMXG00000009833 Astyanax mexicanus ENSAMXG00000009833 I 0.855
ENSAMEG00000017162 Ailuropoda melanoleuca ENSAMEG00000017162 I 0.855
TCF4 Canis familiaris ENSCAFG00000000140 I 0.855
TCF4 Choloepus hoffmanni ENSCHOG00000000331 I 0.855
Tcf4 Dipodomys ordii ENSDORG00000012697 I 0.855
ENSDNOG00000013859 Dasypus novemcinctus ENSDNOG00000013859 I 0.855
ENSCSAG00000018141 Chlorocebus sabaeus ENSCSAG00000018141 I 0.855
TCF4 Callithrix jacchus ENSCJAG00000004038 I 0.855
TCF4 Tupaia belangeri ENSTBEG00000015498 I 0.855
TCF4 Microcebus murinus ENSMICG00000012305 I 0.855
ENSPSIG00000014469 Pelodiscus sinensis ENSPSIG00000014469 I 0.855
ENSPPYG00000009175 Pongo abelii ENSPPYG00000009175 I 0.855
ENSPMAG00000000958 Petromyzon marinus ENSPMAG00000000958 I 0.855
ENSPFOG00000009937 Poecilia formosa ENSPFOG00000009937 I 0.855
TCF4 Pan troglodytes ENSPTRG00000010040 I 0.855
TCF4 Pteropus vampyrus ENSPVAG00000002074 I 0.855
ENSSTOG00000005134 Ictidomys tridecemlineatus ENSSTOG00000005134 I 0.855
TCF4 Sus scrofa ENSSSCG00000004535 I 0.855
ENSSHAG00000014955 Sarcophilus harrisii ENSSHAG00000014955 I 0.855
Tcf4 Rattus norvegicus ENSRNOG00000012405 I 0.855
ENSMLUG00000012927 Myotis lucifugus ENSMLUG00000012927 I 0.855
ENSORLG00000015062 Oryzias latipes ENSORLG00000015062 I 0.855
Tcf4 Mus musculus ENSMUSG00000053477 D 0.855
ENSMPUG00000016460 Mustela putorius furo ENSMPUG00000016460 I 0.855
TCF4 Monodelphis domestica ENSMODG00000020455 I 0.855
TCF4 Macaca mulatta ENSMMUG00000012001 I 0.855
ENSONIG00000012720 Oreochromis niloticus ENSONIG00000012720 I 0.855
ENSNLEG00000007981 Nomascus leucogenys ENSNLEG00000007981 I 0.855
TCF4 Anolis carolinensis ENSACAG00000008863 I 0.855
TCF4 Oryctolagus cuniculus ENSOCUG00000002669 I 0.855
ENSOARG00000005018 Ovis aries ENSOARG00000005018 I 0.855
TCF4 Ornithorhynchus anatinus ENSOANG00000003082 I 0.855
XP_002153906.1 Hydra magnipapillata XP_002153906.1 I 0.845