Cmyd_10011837 (Chelonia mydas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cmyd_10011837 T047090_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Npas2
M01731_2.00
Mus musculus
NVCACGTGBN

NVCACGTGBN
PBM
Weirauch et al.(2014)
pTH5457
0.882 0.979
NPAS2
M04158_2.00
Homo sapiens
NRCACGTGKH

DMCACGTGYN
SELEX
Yin et al.(2017)
NPAS2_eDBD_HT-SELEX
0.882 0.979
Npas2
M09468_2.00
Mus musculus
VKCACRTGKM

KMCAYGTGMB
Misc
Heinz et al.(2010)
Liver-NPAS2_GSE39860
0.882 0.979
NPAS2
M04159_2.00
Homo sapiens
DVCRCRTGKH

DMCAYGYGBH
SELEX
Yin et al.(2017)
NPAS2_eDBD_Methyl-HT-SELEX
0.882 0.979
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10011837 bHLH 25 72

Links

Other bHLH family TFs
Other Chelonia mydas TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF038 Arabidopsis thaliana AT2G35700 D 0.000
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.000
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.000
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.000
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.000
ERF039 Arabidopsis thaliana AT4G16750 D 0.000
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.000
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.000
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.000
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.000
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.000
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.000
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.000
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.000
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.000
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.000
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.000
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.000
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.000
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.000
Gorai.008G107700 Gossypium raimondii Gorai.008G107700 I 0.000
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.000
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.000
PK25970.1 Cannabis sativa PK25970.1 I 0.000
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.000
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.000
SapurV1A.1528s0030 Salix purpurea SapurV1A.1528s0030 I 0.000
SapurV1A.1360s0120 Salix purpurea SapurV1A.1360s0120 I 0.000
SapurV1A.1087s0080 Salix purpurea SapurV1A.1087s0080 I 0.000
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.000
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.000
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.000
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.000
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.000
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.000
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.000
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.000
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.000
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.000
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.000
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.000
Bra040092 Brassica rapa Bra040092 I 0.000
Bra023026 Brassica rapa Bra023026 I 0.000
Bra012693 Brassica rapa Bra012693 I 0.000
Bra005314 Brassica rapa Bra005314 I 0.000
Bo7g104770 Brassica oleracea Bo7g104770 I 0.000
Bo4g184540 Brassica oleracea Bo4g184540 I 0.000
Bo4g036220 Brassica oleracea Bo4g036220 I 0.000
Bo3g028500 Brassica oleracea Bo3g028500 I 0.000
POPTR_0001s15550 Populus trichocarpa POPTR_0001s15550 I 0.000
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.000
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.000
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.000
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.000
28353.m000054 Ricinus communis 28353.m000054 I 0.000
Pm023417 Prunus mume Pm023417 I 0.000
Pm013463 Prunus mume Pm013463 I 0.000
Cla017050 Citrullus lanatus Cla017050 I 0.000
Cla005715 Citrullus lanatus Cla005715 I 0.000
Ca_28185 Cicer arietinum Ca_28185 I 0.000
Ca_12765 Cicer arietinum Ca_12765 I 0.000
Ca_01908 Cicer arietinum Ca_01908 I 0.000
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.000
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.000
TCM_015930 Theobroma cacao TCM_015930 I 0.000
Bo1g053270 Brassica oleracea Bo1g053270 I 0.000