Pvit_07548 (Pogona vitticeps)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pvit_07548 T047720_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Usf1
M01732_2.00
Mus musculus
NRYCACGTGNN

NNCACGTGRYN
PBM
Weirauch et al.(2014)
pTH4376
0.914 0.981
USF1
M02792_2.00
Homo sapiens
RNCACGTGRY

RYCACGTGNY
SELEX
Jolma et al.(2013)
USF1_1
0.914 0.981
USF1
M04146_2.00
Homo sapiens
NVCACGTGVCN

NGBCACGTGBN
SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX
0.914 0.981
USF1
M08056_2.00
Homo sapiens
RGTCACRTGVB

VBCAYGTGACY
ChIP-seq
Mathelier et al.(2014)
MA0093.2
0.914 0.981
USF1
M07807_2.00
Homo sapiens
VGTCACGTGRBSVVV

BBBSVYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha
0.914 0.981
USF1
M07808_2.00
Homo sapiens
VVGTCACGTGVBSVS

SBSVBCACGTGACBB
ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha
0.914 0.981
USF1
M07809_2.00
Homo sapiens
RGTCACGTGVBSVNN

NNBSVBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha
0.914 0.981
USF1
M07810_2.00
Homo sapiens
VGTCACGTGRB

VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha
0.914 0.981
USF1
M07811_2.00
Homo sapiens
NVGTCACGTGVSSV

BSSBCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha
0.914 0.981
USF1
M08733_2.00
Homo sapiens
VGTCACGTGVBS

SVBCACGTGACB
Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A
0.914 0.981
Usf1
M08756_2.00
Mus musculus
NNGTCACGTGVBS

SVBCACGTGACNN
Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A
0.914 0.981
USF1
M09460_2.00
Homo sapiens
YCACGTGRBN

NVYCACGTGR
Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465
0.914 0.981
USF1
M09867_2.00
Homo sapiens
NNRYCACGTGRYNN

NNRYCACGTGRYNN
Transfac
Matys et al.(2006)
V$USF_01
0.914 0.981
USF1
M09868_2.00
Homo sapiens
NNRNCAYRTGNYNN

NNRNCAYRTGNYNN
Transfac
Matys et al.(2006)
V$USF_02
0.914 0.981
USF1
M09869_2.00
Homo sapiens
HCACGTGH

DCACGTGD
Transfac
Matys et al.(2006)
V$USF_C
0.914 0.981
USF1
M04147_2.00
Homo sapiens
VHCAYGTGAYN

NRTCACRTGDB
SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX
0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_07548 bHLH 202 257

Links

Other bHLH family TFs
Other Pogona vitticeps TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000015606 Ailuropoda melanoleuca ENSAMEG00000015606 I 0.914
Alligator_sinensis_CCG013447.1 Alligator sinensis Alligator_sinensis_CCG013447.1 I 0.914
ENSP00000357000-D1 Bos grunniens ENSP00000357000-D1 I 0.914
USF1 Bos taurus ENSBTAG00000017873 I 0.914
USF1 Callithrix jacchus ENSCJAG00000005396 I 0.914
USF1 Canis familiaris ENSCAFG00000012689 I 0.914
USF1 Cavia porcellus ENSCPOG00000003957 I 0.914
ENSCSAG00000002622 Chlorocebus sabaeus ENSCSAG00000002622 I 0.914
USF1 Choloepus hoffmanni ENSCHOG00000011010 I 0.914
ARHGAP30 Dasypus novemcinctus ENSDNOG00000005811 I 0.914
USF1 Equus caballus ENSECAG00000004755 I 0.914
USF1 Felis catus ENSFCAG00000012307 I 0.914
USF1 Gorilla gorilla ENSGGOG00000003935 I 0.914
USF1 Homo sapiens ENSG00000158773 D 0.914
ENSSTOG00000012364 Ictidomys tridecemlineatus ENSSTOG00000012364 I 0.914
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I 0.861
ENSLOCG00000000641 Lepisosteus oculatus ENSLOCG00000000641 I 0.843
USF1 Loxodonta africana ENSLAFG00000011338 I 0.914
ENSMMUP00000002682 Macaca fascicularis ENSMMUP00000002682 I 0.914
USF1 Macaca mulatta ENSMMUG00000002003 I 0.914
ENSMEUG00000009683 Macropus eugenii ENSMEUG00000009683 I 0.914
USF1 Microcebus murinus ENSMICG00000007199 I 0.914
USF1 Monodelphis domestica ENSMODG00000005443 I 0.914
ENSMPUG00000014181 Mustela putorius furo ENSMPUG00000014181 I 0.912
Usf1 Mus musculus ENSMUSG00000026641 D 0.914
USF1 Myotis lucifugus ENSMLUG00000009179 I 0.914
ENSNLEG00000013935 Nomascus leucogenys ENSNLEG00000013935 I 0.914
USF1 Ochotona princeps ENSOPRG00000003858 I 0.914
Ogr08237 Ophisaurus gracilis Ogr08237 I 0.914
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I 0.874
USF1 Oryctolagus cuniculus ENSOCUG00000002352 I 0.914
ENSOGAG00000006705 Otolemur garnettii ENSOGAG00000006705 I 0.914
ENSOARG00000009376 Ovis aries ENSOARG00000009376 I 0.914
ENSOARG00000003162 Ovis aries ENSOARG00000003162 I 0.914
USF1 Pan troglodytes ENSPTRG00000001565 I 0.914
ENSPANG00000016141 Papio anubis ENSPANG00000016141 I 0.914
PHUM287950 Pediculus humanus PHUM287950 I 0.839
ENSPSIG00000008116 Pelodiscus sinensis ENSPSIG00000008116 I 0.914
ENSPPYG00000000619 Pongo abelii ENSPPYG00000000619 I 0.914
USF1 Pteropus vampyrus ENSPVAG00000005489 I 0.914
Usf1 Rattus norvegicus ENSRNOG00000004255 I 0.914
ENSSHAG00000016124 Sarcophilus harrisii ENSSHAG00000016124 I 0.914
USF1 Sus scrofa ENSSSCG00000006371 I 0.914
USF1 Tupaia belangeri ENSTBEG00000003164 I 0.914
USF1 Tursiops truncatus ENSTTRG00000009151 I 0.914
USF1 Vicugna pacos ENSVPAG00000008421 I 0.914
B39674 Xenopus laevis B39674 I 0.914
usf1.S Xenopus laevis XB-GENE-6255904 I 0.914
usf1 Xenopus tropicalis XB-GENE-5918718 I 0.914