CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30076.m004542
(
Ricinus communis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
30076.m004542
T047894_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM
KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.854
0.688
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30076.m004542
bHLH
383
430
QVHSLSERKRRDKINKKMRALQALIPNSDKVDKASMLDKAIEYLKTLQ
Links
Other
bHLH
family TFs
Other
Ricinus communis
TFs
60 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29739.m003684
Ricinus communis
29739.m003684
I
0.843
30174.m008814
Ricinus communis
30174.m008814
I
0.854
Aquca_035_00175
Aquilegia coerulea
Aquca_035_00175
I
0.854
Bo3g042120
Brassica oleracea
Bo3g042120
I
0.854
Bo3g054850
Brassica oleracea
Bo3g054850
I
0.854
Bostr.14547s0014
Boechera stricta
Bostr.14547s0014
I
0.854
Bostr.25993s0069
Boechera stricta
Bostr.25993s0069
I
0.841
Bra000560
Brassica rapa
Bra000560
I
0.854
Bra037312
Brassica rapa
Bra037312
I
0.854
Cagra.0050s0002
Capsella grandiflora
Cagra.0050s0002
I
0.841
Cagra.20893s0010
Capsella grandiflora
Cagra.20893s0010
I
0.854
Carubv10001567m.g
Capsella rubella
Carubv10001567m.g
I
0.854
cassava13956.valid.m1
Manihot esculenta
cassava13956.valid.m1
I
0.854
Ca_01053
Cicer arietinum
Ca_01053
I
0.868
Ca_22883
Cicer arietinum
Ca_22883
I
0.854
chr1.CM0122.50.nc
Lotus japonicus
chr1.CM0122.50.nc
I
0.844
Ciclev10019786m.g
Citrus clementina
Ciclev10019786m.g
I
0.893
Ciclev10020053m.g
Citrus clementina
Ciclev10020053m.g
I
0.854
Eucgr.A00998
Eucalyptus grandis
Eucgr.A00998
I
0.852
Eucgr.D02499
Eucalyptus grandis
Eucgr.D02499
I
0.854
Eucgr.H02386
Eucalyptus grandis
Eucgr.H02386
I
0.841
evm.TU.supercontig_212.3
Carica papaya
evm.TU.supercontig_212.3
I
0.854
evm.TU.supercontig_57.28
Carica papaya
evm.TU.supercontig_57.28
I
0.865
gene25546-v1.0-hybrid
Fragaria vesca
gene25546-v1.0-hybrid
I
0.854
GLYMA01G15930
Glycine max
GLYMA01G15930
I
0.854
GLYMA01G32890
Glycine max
GLYMA01G32890
I
0.854
GLYMA03G04000
Glycine max
GLYMA03G04000
I
0.854
GLYMA03G38391
Glycine max
GLYMA03G38391
I
0.845
GLYMA10G27910
Glycine max
GLYMA10G27910
I
0.853
GLYMA11G17120
Glycine max
GLYMA11G17120
I
0.854
GLYMA19G40980
Glycine max
GLYMA19G40980
I
0.845
Gorai.001G148300
Gossypium raimondii
Gorai.001G148300
I
0.893
Gorai.007G088300
Gossypium raimondii
Gorai.007G088300
I
0.854
Gorai.007G118100
Gossypium raimondii
Gorai.007G118100
I
0.873
Gorai.008G106900
Gossypium raimondii
Gorai.008G106900
I
0.854
Lus10009261.g
Linum usitatissimum
Lus10009261.g
I
0.857
Lus10038020.g
Linum usitatissimum
Lus10038020.g
I
0.857
MDP0000439540
Malus domestica
MDP0000439540
I
0.854
mgf005431m
Mimulus guttatus
mgf005431m
I
0.854
orange1.1g012387m.g
Citrus sinensis
orange1.1g012387m.g
I
0.854
orange1.1g038097m.g
Citrus sinensis
orange1.1g038097m.g
I
0.893
PGSC0003DMG400025976
Solanum tuberosum
PGSC0003DMG400025976
I
0.854
PIL1
Arabidopsis thaliana
AT2G46970
I
0.841
PK20816.1
Cannabis sativa
PK20816.1
I
0.854
PK25041.1
Cannabis sativa
PK25041.1
I
0.878
POPTR_0002s14430
Populus trichocarpa
POPTR_0002s14430
I
0.854
POPTR_0006s13790
Populus trichocarpa
POPTR_0006s13790
I
0.843
POPTR_0014s10700
Populus trichocarpa
POPTR_0014s10700
I
0.858
PRUPE_ppa005629mg
Prunus persica
PRUPE_ppa005629mg
I
0.854
SapurV1A.0033s0400
Salix purpurea
SapurV1A.0033s0400
I
0.854
SapurV1A.0249s0140
Salix purpurea
SapurV1A.0249s0140
I
0.843
SapurV1A.0321s0050
Salix purpurea
SapurV1A.0321s0050
I
0.893
Solyc01g090790.2
Solanum lycopersicum
Solyc01g090790.2
I
0.854
Solyc04g007430.1
Solanum lycopersicum
Solyc04g007430.1
N
0.856
TCM_004959
Theobroma cacao
TCM_004959
I
0.873
TCM_005607
Theobroma cacao
TCM_005607
I
0.854
Thhalv10028687m.g
Eutrema salsugineum
Thhalv10028687m.g
I
0.854
UNE10
Vitis vinifera
VIT_15s0021g02690
I
0.854
UNE10
Arabidopsis lyrata
scaffold_604304.1
I
0.854
UNE10
Arabidopsis thaliana
AT4G00050
D
0.854