CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30131.m006993
(
Ricinus communis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
30131.m006993
T047900_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.879
0.979
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30131.m006993
bHLH
240
287
AKNLMAERRRRKRLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELL
Links
Other
bHLH
family TFs
Other
Ricinus communis
TFs
254 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava7475.valid.m1
Manihot esculenta
cassava7475.valid.m1
I
0.914
Traes_7AL_ACAC47D88
Triticum aestivum
Traes_7AL_ACAC47D88
I
0.879
Traes_7BL_BF5300D88
Triticum aestivum
Traes_7BL_BF5300D88
I
0.879
TRAES3BF001100060CFD_g
Triticum aestivum
TRAES3BF001100060CFD_g
I
0.879
Traes_7DL_2A7EF919F
Triticum aestivum
Traes_7DL_2A7EF919F
I
0.879
Solyc03g118310.2
Solanum lycopersicum
Solyc03g118310.2
I
0.879
Si001874m.g
Setaria italica
Si001874m.g
I
0.879
Si026212m.g
Setaria italica
Si026212m.g
I
0.879
TRIUR3_17003
Triticum urartu
TRIUR3_17003
I
0.879
TCM_017336
Theobroma cacao
TCM_017336
I
0.879
VIT_01s0244g00130
Vitis vinifera
VIT_01s0244g00130
I
0.879
Cla003283
Citrullus lanatus
Cla003283
I
0.879
Pm016093
Prunus mume
Pm016093
I
0.879
Pm024587
Prunus mume
Pm024587
I
0.879
Cla002682
Citrullus lanatus
Cla002682
I
0.879
Ca_01394
Cicer arietinum
Ca_01394
I
0.879
VIT_14s0068g01200
Vitis vinifera
VIT_14s0068g01200
I
0.879
VIT_17s0000g00330
Vitis vinifera
VIT_17s0000g00330
I
0.879
SELMODRAFT_94010
Selaginella moellendorffii
SELMODRAFT_94010
I
0.879
SELMODRAFT_91237
Selaginella moellendorffii
SELMODRAFT_91237
I
0.879
ORUFI11G16280
Oryza rufipogon
ORUFI11G16280
I
0.879
OS01G0928000
Oryza sativa
OS01G0928000
I
0.879
OS11G0523700
Oryza sativa
OS11G0523700
I
0.879
ORUFI01G46010
Oryza rufipogon
ORUFI01G46010
I
0.879
ORGLA11G0129200
Oryza glaberrima
ORGLA11G0129200
I
0.879
OPUNC01G41620
Oryza punctata
OPUNC01G41620
I
0.879
OPUNC11G12640
Oryza punctata
OPUNC11G12640
I
0.879
ORGLA01G0363500
Oryza glaberrima
ORGLA01G0363500
I
0.879
POPTR_0012s10780
Populus trichocarpa
POPTR_0012s10780
I
0.879
POPTR_0015s11650
Populus trichocarpa
POPTR_0015s11650
I
0.879
SELMODRAFT_119431
Selaginella moellendorffii
SELMODRAFT_119431
I
0.879
SELMODRAFT_138758
Selaginella moellendorffii
SELMODRAFT_138758
I
0.879
SELMODRAFT_75047
Selaginella moellendorffii
SELMODRAFT_75047
I
0.879
Sb05g019530
Sorghum bicolor
Sb05g019530
I
0.879
Sb03g044660
Sorghum bicolor
Sb03g044660
I
0.879
PRUPE_ppa005038mg
Prunus persica
PRUPE_ppa005038mg
I
0.879
PRUPE_ppa018220mg
Prunus persica
PRUPE_ppa018220mg
I
0.879
30147.m014419
Ricinus communis
30147.m014419
I
0.879
cassava37254.valid.m1
Manihot esculenta
cassava37254.valid.m1
I
0.879
orange1.1g047004m.g
Citrus sinensis
orange1.1g047004m.g
I
0.879
Pavir.Ea03858
Panicum virgatum
Pavir.Ea03858
I
0.879
Pavir.Eb03736
Panicum virgatum
Pavir.Eb03736
I
0.879
orange1.1g011370m.g
Citrus sinensis
orange1.1g011370m.g
I
0.879
MDP0000662999
Malus domestica
MDP0000662999
I
0.879
Gorai.007G072600
Gossypium raimondii
Gorai.007G072600
I
0.879
MDP0000247912
Malus domestica
MDP0000247912
I
0.879
MDP0000304669
Malus domestica
MDP0000304669
I
0.879
Pavir.Hb00982
Panicum virgatum
Pavir.Hb00982
I
0.879
SapurV1A.0517s0250
Salix purpurea
SapurV1A.0517s0250
I
0.879
PK06940.1
Cannabis sativa
PK06940.1
I
0.879
chr1.CM1880.50.nc
Lotus japonicus
chr1.CM1880.50.nc
I
0.879
LjSGA_024382.1
Lotus japonicus
LjSGA_024382.1
I
0.879
Thhalv10007566m.g
Eutrema salsugineum
Thhalv10007566m.g
I
0.879
Thhalv10004059m.g
Eutrema salsugineum
Thhalv10004059m.g
I
0.879
SapurV1A.0672s0200
Salix purpurea
SapurV1A.0672s0200
I
0.879
SapurV1A.0774s0030
Salix purpurea
SapurV1A.0774s0030
I
0.879
Gorai.007G044800
Gossypium raimondii
Gorai.007G044800
I
0.879
Gorai.001G275600
Gossypium raimondii
Gorai.001G275600
I
0.879
mgf012194m
Mimulus guttatus
mgf012194m
I
0.879
mgf015974m
Mimulus guttatus
mgf015974m
I
0.879
mgf016462m
Mimulus guttatus
mgf016462m
I
0.879
estExt_Genewise1.C_510113
Physcomitrella patens
estExt_Genewise1.C_510113
I
0.879
estExt_fgenesh1_pg.C_300202
Physcomitrella patens
estExt_fgenesh1_pg.C_300202
I
0.879
ONIVA12G10770
Oryza nivara
ONIVA12G10770
I
0.879
Cucsa.134750
Cucumis sativus
Cucsa.134750
I
0.879
Cucsa.156040
Cucumis sativus
Cucsa.156040
I
0.879
Aquca_100_00035
Aquilegia coerulea
Aquca_100_00035
I
0.879
Bostr.0556s0344
Boechera stricta
Bostr.0556s0344
I
0.879
Eucgr.G01938
Eucalyptus grandis
Eucgr.G01938
I
0.879
evm.TU.supercontig_70.77
Carica papaya
evm.TU.supercontig_70.77
I
0.879
gene06435-v1.0-hybrid
Fragaria vesca
gene06435-v1.0-hybrid
I
0.879
Ciclev10015052m.g
Citrus clementina
Ciclev10015052m.g
I
0.879
Carubv10017099m.g
Capsella rubella
Carubv10017099m.g
I
0.879
Bostr.13671s0164
Boechera stricta
Bostr.13671s0164
I
0.879
Cagra.23157s0001
Capsella grandiflora
Cagra.23157s0001
I
0.879
cassava17838.valid.m1
Manihot esculenta
cassava17838.valid.m1
I
0.879
TCM_014741
Theobroma cacao
TCM_014741
I
0.879
LPERR11G11940
Leersia perrieri
LPERR11G11940
I
0.879
MLOC_46407
Hordeum vulgare
MLOC_46407
I
0.879
Bo7g083870
Brassica oleracea
Bo7g083870
I
0.879
Bo8g065080
Brassica oleracea
Bo8g065080
I
0.879
LPERR01G37160
Leersia perrieri
LPERR01G37160
I
0.879
MLOC_76805
Hordeum vulgare
MLOC_76805
I
0.879
MTR_3g498695
Medicago truncatula
MTR_3g498695
I
0.879
BGIOSGA035358
Oryza indica
BGIOSGA035358
I
0.879
GLYMA06G17330
Glycine max
GLYMA06G17330
I
0.879
Bo00285s440
Brassica oleracea
Bo00285s440
I
0.879
GRMZM2G173534
Zea mays
GRMZM2G173534
I
0.879
Bo5g016510
Brassica oleracea
Bo5g016510
I
0.879
Bo9g008020
Brassica oleracea
Bo9g008020
I
0.879
GLYMA16G05390
Glycine max
GLYMA16G05390
I
0.879
GSMUA_Achr10G18380_001
Musa acuminata
GSMUA_Achr10G18380_001
I
0.879
Bra019794
Brassica rapa
Bra019794
I
0.879
Bra025226
Brassica rapa
Bra025226
I
0.879
GSMUA_Achr10G12060_001
Musa acuminata
GSMUA_Achr10G12060_001
I
0.879
GRMZM2G172297
Zea mays
GRMZM2G172297
I
0.879
Bra016749
Brassica rapa
Bra016749
I
0.879
GRMZM2G033356
Zea mays
GRMZM2G033356
I
0.879
Bra034246
Brassica rapa
Bra034246
I
0.879
GLYMA19G27483
Glycine max
GLYMA19G27483
I
0.879
GSMUA_Achr6G08070_001
Musa acuminata
GSMUA_Achr6G08070_001
I
0.879
Bra032947
Brassica rapa
Bra032947
I
0.879
OBART11G15260
Oryza barthii
OBART11G15260
I
0.879
OBART01G42600
Oryza barthii
OBART01G42600
I
0.879
OMERI11G12580
Oryza meridionalis
OMERI11G12580
I
0.879
F775_14780
Aegilops tauschii
F775_14780
I
0.879
AMTR_s00016p00170610
Amborella trichopoda
AMTR_s00016p00170610
I
0.879
GLYMA04G37750
Glycine max
GLYMA04G37750
I
0.879
SCRM
Arabidopsis thaliana
AT3G26744
D
0.879
OGLUM11G14700
Oryza glumaepatula
OGLUM11G14700
I
0.879
BGIOSGA000206
Oryza indica
BGIOSGA000206
I
0.879
SCRM2
Arabidopsis thaliana
AT1G12860
I
0.879
BRADI2G59497
Brachypodium distachyon
BRADI2G59497
I
0.879
OGLUM01G46870
Oryza glumaepatula
OGLUM01G46870
I
0.879
OMERI01G39590
Oryza meridionalis
OMERI01G39590
I
0.879
ICE1
Arabidopsis lyrata
fgenesh2_kg.5__441__AT3G26744.2
I
0.879
ONIVA01G48650
Oryza nivara
ONIVA01G48650
I
0.879
GSMUA_Achr11G09640_001
Musa acuminata
GSMUA_Achr11G09640_001
I
0.868
MTR_7g083900
Medicago truncatula
MTR_7g083900
I
0.868
Ca_23892
Cicer arietinum
Ca_23892
I
0.868
Pavir.Ha01426
Panicum virgatum
Pavir.Ha01426
I
0.868
ORUFI04G07840
Oryza rufipogon
ORUFI04G07840
N
0.867
OS04G0300600
Oryza sativa
OS04G0300600
N
0.867
OPUNC04G05620
Oryza punctata
OPUNC04G05620
N
0.867
OBART04G06800
Oryza barthii
OBART04G06800
N
0.867
BGIOSGA015389
Oryza indica
BGIOSGA015389
N
0.867
OGLUM04G06590
Oryza glumaepatula
OGLUM04G06590
N
0.867
ONIVA01G07150
Oryza nivara
ONIVA01G07150
N
0.867
OMERI03G04040
Oryza meridionalis
OMERI03G04040
N
0.867
ORGLA04G0051300
Oryza glaberrima
ORGLA04G0051300
N
0.867
GSMUA_Achr3G00640_001
Musa acuminata
GSMUA_Achr3G00640_001
N
0.865
29631.m001025
Ricinus communis
29631.m001025
N
0.862
fgenesh2_kg.6__1024__AT5G10570.1
Arabidopsis lyrata
fgenesh2_kg.6__1024__AT5G10570.1
N
0.856
mgf017272m
Mimulus guttatus
mgf017272m
N
0.856
gene26895-v1.0-hybrid
Fragaria vesca
gene26895-v1.0-hybrid
N
0.856
gene05560-v1.0-hybrid
Fragaria vesca
gene05560-v1.0-hybrid
N
0.856
Eucgr.F00459
Eucalyptus grandis
Eucgr.F00459
N
0.856
Ciclev10001683m.g
Citrus clementina
Ciclev10001683m.g
N
0.856
Carubv10026606m.g
Capsella rubella
Carubv10026606m.g
N
0.856
Cagra.0917s0023
Capsella grandiflora
Cagra.0917s0023
N
0.856
Bostr.13175s0042
Boechera stricta
Bostr.13175s0042
N
0.856
Bostr.0568s0223
Boechera stricta
Bostr.0568s0223
N
0.856
Eucgr.F02171
Eucalyptus grandis
Eucgr.F02171
N
0.856
Ciclev10025967m.g
Citrus clementina
Ciclev10025967m.g
N
0.856
BRADI1G30000
Brachypodium distachyon
BRADI1G30000
N
0.856
Eucgr.I00608
Eucalyptus grandis
Eucgr.I00608
N
0.856
MDP0000312274
Malus domestica
MDP0000312274
N
0.856
SapurV1A.0004s0900
Salix purpurea
SapurV1A.0004s0900
N
0.856
BGIOSGA023624
Oryza indica
BGIOSGA023624
N
0.856
Pavir.J18000
Panicum virgatum
Pavir.J18000
N
0.856
Bo3g097890
Brassica oleracea
Bo3g097890
N
0.856
orange1.1g038389m.g
Citrus sinensis
orange1.1g038389m.g
N
0.856
BHLH93
Arabidopsis thaliana
AT5G65640
N
0.856
Thhalv10004732m.g
Eutrema salsugineum
Thhalv10004732m.g
N
0.856
LjSGA_043777.1
Lotus japonicus
LjSGA_043777.1
N
0.856
PDK_20s1771821g001
Phoenix dactylifera
PDK_20s1771821g001
N
0.856
chr2.CM0177.460.nc
Lotus japonicus
chr2.CM0177.460.nc
N
0.856
PK12634.1
Cannabis sativa
PK12634.1
N
0.856
BHLH61
Arabidopsis thaliana
AT5G10570
N
0.856
orange1.1g018897m.g
Citrus sinensis
orange1.1g018897m.g
N
0.856
MDP0000644807
Malus domestica
MDP0000644807
N
0.856
Gorai.009G226200
Gossypium raimondii
Gorai.009G226200
N
0.856
Gorai.010G031800
Gossypium raimondii
Gorai.010G031800
N
0.856
Gorai.007G229900
Gossypium raimondii
Gorai.007G229900
N
0.856
Gorai.003G035900
Gossypium raimondii
Gorai.003G035900
N
0.856
Gorai.002G137900
Gossypium raimondii
Gorai.002G137900
N
0.856
Lus10002160.g
Linum usitatissimum
Lus10002160.g
N
0.856
Lus10039631.g
Linum usitatissimum
Lus10039631.g
N
0.856
bHLH093
Arabidopsis lyrata
fgenesh2_kg.8__2611__AT5G65640.1
N
0.856
MDP0000603926
Malus domestica
MDP0000603926
N
0.856
Bo9g171940
Brassica oleracea
Bo9g171940
N
0.856
MDP0000178782
Malus domestica
MDP0000178782
N
0.856
MDP0000175282
Malus domestica
MDP0000175282
N
0.856
Bra024404
Brassica rapa
Bra024404
N
0.856
GLYMA06G09670
Glycine max
GLYMA06G09670
N
0.856
GLYMA01G02390
Glycine max
GLYMA01G02390
N
0.856
OPUNC06G25390
Oryza punctata
OPUNC06G25390
N
0.856
PGSC0003DMG400030616
Solanum tuberosum
PGSC0003DMG400030616
N
0.856
GSMUA_Achr7G03930_001
Musa acuminata
GSMUA_Achr7G03930_001
N
0.856
TCM_034574
Theobroma cacao
TCM_034574
N
0.856
GSMUA_Achr1G26300_001
Musa acuminata
GSMUA_Achr1G26300_001
N
0.856
Traes_7DL_67FF12B6A
Triticum aestivum
Traes_7DL_67FF12B6A
N
0.856
Pm002283
Prunus mume
Pm002283
N
0.856
Pm004330
Prunus mume
Pm004330
N
0.856
VIT_18s0001g08040
Vitis vinifera
VIT_18s0001g08040
N
0.856
VIT_17s0000g03550
Vitis vinifera
VIT_17s0000g03550
N
0.856
VIT_00s1312g00010
Vitis vinifera
VIT_00s1312g00010
N
0.856
GSMUA_Achr8G34120_001
Musa acuminata
GSMUA_Achr8G34120_001
N
0.856
TCM_000915
Theobroma cacao
TCM_000915
N
0.856
PRUPE_ppa016514mg
Prunus persica
PRUPE_ppa016514mg
N
0.856
OBART06G27800
Oryza barthii
OBART06G27800
N
0.856
PRUPE_ppa007656mg
Prunus persica
PRUPE_ppa007656mg
N
0.856
OBART06G27860
Oryza barthii
OBART06G27860
N
0.856
POPTR_0002s10910
Populus trichocarpa
POPTR_0002s10910
N
0.856
Sb10g030470
Sorghum bicolor
Sb10g030470
N
0.856
MTR_5g030770
Medicago truncatula
MTR_5g030770
N
0.856
Solyc02g091690.2
Solanum lycopersicum
Solyc02g091690.2
N
0.856
Solyc02g063430.2
Solanum lycopersicum
Solyc02g063430.2
N
0.856
LPERR06G23280
Leersia perrieri
LPERR06G23280
N
0.856
Si006877m.g
Setaria italica
Si006877m.g
N
0.856
GRMZM2G128807
Zea mays
GRMZM2G128807
N
0.856
Ca_11531
Cicer arietinum
Ca_11531
N
0.856
ONIVA06G30800
Oryza nivara
ONIVA06G30800
N
0.856
28179.m000457
Ricinus communis
28179.m000457
N
0.856
GLYMA08G37240
Glycine max
GLYMA08G37240
N
0.856
cassava42105.valid.m1
Manihot esculenta
cassava42105.valid.m1
N
0.856
PGSC0003DMG400006394
Solanum tuberosum
PGSC0003DMG400006394
N
0.856
OGLUM06G29220
Oryza glumaepatula
OGLUM06G29220
N
0.856
GLYMA04G09580
Glycine max
GLYMA04G09580
N
0.856
mgf011848m
Mimulus guttatus
mgf011848m
N
0.856
OMERI06G27810
Oryza meridionalis
OMERI06G27810
N
0.856
ORUFI06G29810
Oryza rufipogon
ORUFI06G29810
N
0.856
GLYMA09G33590
Glycine max
GLYMA09G33590
N
0.856
Cucsa.103760
Cucumis sativus
Cucsa.103760
N
0.856
cassava1707.valid.m1
Manihot esculenta
cassava1707.valid.m1
N
0.856
29596.m000688
Ricinus communis
29596.m000688
N
0.856
cassava35909.valid.m1
Manihot esculenta
cassava35909.valid.m1
N
0.856
cassava20174.m1
Manihot esculenta
cassava20174.m1
N
0.856
PGSC0003DMG400010388
Solanum tuberosum
PGSC0003DMG400010388
N
0.856
evm.TU.supercontig_1024.1
Carica papaya
evm.TU.supercontig_1024.1
I
0.855
gw1.257.54.1
Physcomitrella patens
gw1.257.54.1
I
0.855
Aquca_019_00147
Aquilegia coerulea
Aquca_019_00147
I
0.855
PDK_20s1347451g001
Phoenix dactylifera
PDK_20s1347451g001
I
0.855
PGSC0003DMG400014246
Solanum tuberosum
PGSC0003DMG400014246
I
0.855
GSMUA_Achr1G07330_001
Musa acuminata
GSMUA_Achr1G07330_001
I
0.855
MDP0000219146
Malus domestica
MDP0000219146
I
0.855
PK06841.1
Cannabis sativa
PK06841.1
I
0.855
GSMUA_Achr1G07450_001
Musa acuminata
GSMUA_Achr1G07450_001
I
0.855
Aquca_072_00056
Aquilegia coerulea
Aquca_072_00056
I
0.852
SCRM2
Arabidopsis lyrata
Al_scaffold_0001_1326
I
0.852
POPTR_0006s07420
Populus trichocarpa
POPTR_0006s07420
I
0.852
estExt_fgenesh1_pg.C_1240017
Physcomitrella patens
estExt_fgenesh1_pg.C_1240017
I
0.852
gw1.90.96.1
Physcomitrella patens
gw1.90.96.1
I
0.852
PGSC0003DMG401028788
Solanum tuberosum
PGSC0003DMG401028788
I
0.849
Lus10032542.g
Linum usitatissimum
Lus10032542.g
I
0.849
Carubv10009081m.g
Capsella rubella
Carubv10009081m.g
I
0.849
BRADI4G17460
Brachypodium distachyon
BRADI4G17460
I
0.849
Cagra.0568s0207
Capsella grandiflora
Cagra.0568s0207
I
0.849
GLYMA05G38530
Glycine max
GLYMA05G38530
I
0.849
Lus10043199.g
Linum usitatissimum
Lus10043199.g
I
0.849
Solyc06g068870.2
Solanum lycopersicum
Solyc06g068870.2
I
0.849
Eucgr.G01783
Eucalyptus grandis
Eucgr.G01783
I
0.842
VIT_01s0127g00860
Vitis vinifera
VIT_01s0127g00860
I
0.842
evm.TU.supercontig_20.95
Carica papaya
evm.TU.supercontig_20.95
I
0.842
mgf026193m
Mimulus guttatus
mgf026193m
N
0.840
SapurV1A.0001s2810
Salix purpurea
SapurV1A.0001s2810
N
0.840
POPTR_0006s07440
Populus trichocarpa
POPTR_0006s07440
N
0.840
SapurV1A.0069s0030
Salix purpurea
SapurV1A.0069s0030
N
0.839
POPTR_0010s05120
Populus trichocarpa
POPTR_0010s05120
N
0.839
SapurV1A.0140s0250
Salix purpurea
SapurV1A.0140s0250
I
0.839
POPTR_0008s19390
Populus trichocarpa
POPTR_0008s19390
N
0.839
SapurV1A.3355s0020
Salix purpurea
SapurV1A.3355s0020
I
0.839
POPTR_0018s13830
Populus trichocarpa
POPTR_0018s13830
I
0.839
Traes_3DL_4544FA87D
Triticum aestivum
Traes_3DL_4544FA87D
I
0.469