30138.m003913 (Ricinus communis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 30138.m003913 T047905_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.888 0.902
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.860 0.922
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.860 0.922
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.860 0.922
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.860 0.922
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.840 0.765
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.840 0.765
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.840 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30138.m003913 bHLH 264 314

Links

Other bHLH family TFs
Other Ricinus communis TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.902
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.902
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.890
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.890
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.890
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.890
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.890
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.890
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.890
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.890
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.890
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.890
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.890
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.890
TCM_014392 Theobroma cacao TCM_014392 I 0.890
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.890
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.888
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.888
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.888
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.888
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.888
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.888
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.888
OS08G0490000 Oryza sativa OS08G0490000 I 0.888
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.888
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.888
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.888
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.888
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.888
OB08G25940 Oryza brachyantha OB08G25940 I 0.888
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.888
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.888
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.888
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.879
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.879
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.878
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.870
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.870
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.870
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.870
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.870
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.870
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.870
MDP0000261293 Malus domestica MDP0000261293 I 0.870
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.870
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.870
mgf013208m Mimulus guttatus mgf013208m I 0.870
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.870
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.870
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.870
Cla022382 Citrullus lanatus Cla022382 I 0.870
30138.m003899 Ricinus communis 30138.m003899 I 0.870
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.870
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.870
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.870
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.870
PK01364.1 Cannabis sativa PK01364.1 I 0.868
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.868
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.866
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.866
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.866
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.861
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.861
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.861
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.861
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.861
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.861
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.861
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.861
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.861
Si029604m.g Setaria italica Si029604m.g I 0.861
F775_23096 Aegilops tauschii F775_23096 I 0.861
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.861
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.861
OBART09G13850 Oryza barthii OBART09G13850 I 0.861
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.861
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.861
OS09G0475400 Oryza sativa OS09G0475400 I 0.861
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.861
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.861
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.861
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.861
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.861
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.861
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.860
mgf001137m Mimulus guttatus mgf001137m I 0.860
Bra029354 Brassica rapa Bra029354 I 0.860
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.860
mgf005849m Mimulus guttatus mgf005849m I 0.860
Bra009322 Brassica rapa Bra009322 I 0.860
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.860
Bo2g161110 Brassica oleracea Bo2g161110 I 0.860
BIM1 Arabidopsis thaliana AT5G08130 D 0.860
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.860
PK10562.1 Cannabis sativa PK10562.1 I 0.860
Bo3g004690 Brassica oleracea Bo3g004690 I 0.860
Bo5g020460 Brassica oleracea Bo5g020460 I 0.860
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.860
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.860
Bo9g174770 Brassica oleracea Bo9g174770 I 0.860
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.860
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.860
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.860
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.859
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.858
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.858
Bra005969 Brassica rapa Bra005969 I 0.858
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.858
Si013622m.g Setaria italica Si013622m.g I 0.858
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.857
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.854
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.852
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.852
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.852
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.852
OS02G0726700 Oryza sativa OS02G0726700 I 0.852
OB02G38020 Oryza brachyantha OB02G38020 I 0.852
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.852
Si016505m.g Setaria italica Si016505m.g I 0.852
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.852
Cla018818 Citrullus lanatus Cla018818 I 0.848
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.847
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.847
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.846
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.840
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.840
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.840
Bra038332 Brassica rapa Bra038332 I 0.840
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.840
Ca_22043 Cicer arietinum Ca_22043 I 0.840
mgf011829m Mimulus guttatus mgf011829m I 0.840
29790.m000843 Ricinus communis 29790.m000843 I 0.840
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.840
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.840
PK00238.1 Cannabis sativa PK00238.1 I 0.840
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.840
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.840
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.840
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.840
BIM2 Arabidopsis thaliana AT1G69010 D 0.840
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.840
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.840
Bo2g062560 Brassica oleracea Bo2g062560 I 0.840
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.840
TCM_011433 Theobroma cacao TCM_011433 I 0.840
Bo6g108530 Brassica oleracea Bo6g108530 I 0.840
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.840
TCM_019015 Theobroma cacao TCM_019015 I 0.840
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.840
Bra004355 Brassica rapa Bra004355 I 0.840
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.840
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.840
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.840
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.840
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.840
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.840
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.840
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.840
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.840
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.840
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.840
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.840
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.840