cassava14.valid.m1 (Manihot esculenta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 cassava14.valid.m1 T047950_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.884 0.784
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.884 0.784
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.884 0.784
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.864 0.863
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.864 0.863
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.864 0.863
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.864 0.863
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.861 0.843
BIM3
M01711_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8591
0.861 0.902
BIM3
M06741_2.00
Arabidopsis thaliana
DYGTSHNNVKCACGTGMY

RKCACGTGMBNNDSACRH
Dap-seq
OMalley et al.(2016)
BIM3_col_a
0.861 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava14.valid.m1 bHLH 25 75

Links

Other bHLH family TFs
Other Manihot esculenta TFs

Invalid Input OrderBy

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action