cassava29318.valid.m1 (Manihot esculenta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 cassava29318.valid.m1 T048023_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.912 0.922
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.884 0.941
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.884 0.941
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.884 0.941
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.884 0.941
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.864 0.784
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.864 0.784
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.864 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava29318.valid.m1 bHLH 261 311

Links

Other bHLH family TFs
Other Manihot esculenta TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.914
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.914
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.914
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.914
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.914
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.914
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.914
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.914
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.914
TCM_014392 Theobroma cacao TCM_014392 I 0.914
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.914
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.914
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.914
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.912
OB08G25940 Oryza brachyantha OB08G25940 I 0.912
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.912
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.912
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.912
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.912
OS08G0490000 Oryza sativa OS08G0490000 I 0.912
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.912
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.912
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.912
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.912
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.912
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.912
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.912
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.912
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.912
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.903
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.903
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.902
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.894
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.894
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.894
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.894
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.894
MDP0000261293 Malus domestica MDP0000261293 I 0.894
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.894
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.894
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.894
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.894
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.894
Cla022382 Citrullus lanatus Cla022382 I 0.894
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.894
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.894
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.894
30138.m003899 Ricinus communis 30138.m003899 I 0.894
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.894
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.894
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.894
mgf013208m Mimulus guttatus mgf013208m I 0.894
PK01364.1 Cannabis sativa PK01364.1 I 0.892
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.892
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.890
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.890
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.890
30138.m003913 Ricinus communis 30138.m003913 I 0.890
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.888
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.885
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.885
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.885
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.885
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.885
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.885
Si029604m.g Setaria italica Si029604m.g I 0.885
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.885
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.885
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.885
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.885
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.885
F775_23096 Aegilops tauschii F775_23096 I 0.885
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.885
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.885
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.885
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.885
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.885
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.885
OBART09G13850 Oryza barthii OBART09G13850 I 0.885
OS09G0475400 Oryza sativa OS09G0475400 I 0.885
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.885
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.884
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.884
mgf005849m Mimulus guttatus mgf005849m I 0.884
PK10562.1 Cannabis sativa PK10562.1 I 0.884
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.884
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.884
mgf001137m Mimulus guttatus mgf001137m I 0.884
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.884
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.884
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.884
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.884
Bo5g020460 Brassica oleracea Bo5g020460 I 0.884
Bo9g174770 Brassica oleracea Bo9g174770 I 0.884
Bra029354 Brassica rapa Bra029354 I 0.884
Bo3g004690 Brassica oleracea Bo3g004690 I 0.884
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.884
Bra009322 Brassica rapa Bra009322 I 0.884
BIM1 Arabidopsis thaliana AT5G08130 D 0.884
Bo2g161110 Brassica oleracea Bo2g161110 I 0.884
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.883
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.882
Bra005969 Brassica rapa Bra005969 I 0.882
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.882
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.882
Si013622m.g Setaria italica Si013622m.g I 0.882
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.881
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.878
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.878
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.878
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.876
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.876
OB02G38020 Oryza brachyantha OB02G38020 I 0.876
OS02G0726700 Oryza sativa OS02G0726700 I 0.876
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.876
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.876
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.876
Si016505m.g Setaria italica Si016505m.g I 0.876
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.876
Cla018818 Citrullus lanatus Cla018818 I 0.872
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.871
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.871
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.870
Bo2g062560 Brassica oleracea Bo2g062560 I 0.864
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.864
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.864
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.864
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.864
Bo6g108530 Brassica oleracea Bo6g108530 I 0.864
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.864
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.864
Bra004355 Brassica rapa Bra004355 I 0.864
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.864
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.864
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.864
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.864
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.864
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.864
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.864
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.864
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.864
29790.m000843 Ricinus communis 29790.m000843 I 0.864
BIM2 Arabidopsis thaliana AT1G69010 D 0.864
TCM_011433 Theobroma cacao TCM_011433 I 0.864
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.864
Ca_22043 Cicer arietinum Ca_22043 I 0.864
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.864
PK00238.1 Cannabis sativa PK00238.1 I 0.864
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.864
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.864
TCM_019015 Theobroma cacao TCM_019015 I 0.864
Bra038332 Brassica rapa Bra038332 I 0.864
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.864
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.864
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.864
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.864
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.864
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.864
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.864
mgf011829m Mimulus guttatus mgf011829m I 0.864
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.861
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.846
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.846
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.846
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.846
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.840
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.840
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.840