cassava45233.m1 (Manihot esculenta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 cassava45233.m1 T048097_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.847 0.833
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN

NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.847 0.833
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK

MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.847 0.833
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.847 0.812
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN

NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.847 0.812
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava45233.m1 bHLH 301 348

Links

Other bHLH family TFs
Other Manihot esculenta TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0003s14710 Populus trichocarpa POPTR_0003s14710 I 0.914
cassava45188.m1 Manihot esculenta cassava45188.m1 I 0.914
cassava45234.m1 Manihot esculenta cassava45234.m1 I 0.914
cassava40529.m1 Manihot esculenta cassava40529.m1 I 0.914
cassava39612.m1 Manihot esculenta cassava39612.m1 I 0.914
SapurV1A.0059s0390 Salix purpurea SapurV1A.0059s0390 I 0.914
POPTR_0001s11400 Populus trichocarpa POPTR_0001s11400 I 0.903
SapurV1A.0094s0280 Salix purpurea SapurV1A.0094s0280 I 0.903
30068.m002581 Ricinus communis 30068.m002581 I 0.894
evm.TU.supercontig_1892.1 Carica papaya evm.TU.supercontig_1892.1 I 0.894
cassava41468.m1 Manihot esculenta cassava41468.m1 I 0.894
Ciclev10019730m.g Citrus clementina Ciclev10019730m.g N 0.890
TCM_015640 Theobroma cacao TCM_015640 N 0.890
orange1.1g010053m.g Citrus sinensis orange1.1g010053m.g N 0.890
Gorai.008G259000 Gossypium raimondii Gorai.008G259000 N 0.890
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I 0.879
Pm029399 Prunus mume Pm029399 I 0.879
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I 0.879
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I 0.879
MTR_8g024790 Medicago truncatula MTR_8g024790 I 0.879
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I 0.879
MTR_8g024770 Medicago truncatula MTR_8g024770 I 0.879
mgf001993m Mimulus guttatus mgf001993m I 0.866
POPTR_0002s17750 Populus trichocarpa POPTR_0002s17750 I 0.866
PGSC0003DMG400018332 Solanum tuberosum PGSC0003DMG400018332 I 0.866
PRUPE_ppa004680mg Prunus persica PRUPE_ppa004680mg I 0.866
27964.m000356 Ricinus communis 27964.m000356 I 0.866
27964.m000352 Ricinus communis 27964.m000352 I 0.866
TCM_005064 Theobroma cacao TCM_005064 I 0.866
cassava29800.valid.m1 Manihot esculenta cassava29800.valid.m1 I 0.866
Solyc01g096370.2 Solanum lycopersicum Solyc01g096370.2 I 0.866
VIT_02s0025g02610 Vitis vinifera VIT_02s0025g02610 I 0.866
Aquca_037_00261 Aquilegia coerulea Aquca_037_00261 I 0.866
cassava32651.m1 Manihot esculenta cassava32651.m1 I 0.866
VIT_15s0048g02820 Vitis vinifera VIT_15s0048g02820 I 0.866
Cagra.4923s0009 Capsella grandiflora Cagra.4923s0009 I 0.866
orange1.1g046178m.g Citrus sinensis orange1.1g046178m.g I 0.866
Gorai.004G149500 Gossypium raimondii Gorai.004G149500 I 0.866
Gorai.001G151700 Gossypium raimondii Gorai.001G151700 I 0.866
Bostr.7365s0026 Boechera stricta Bostr.7365s0026 I 0.866
Gorai.007G111800 Gossypium raimondii Gorai.007G111800 I 0.866
Gorai.008G128800 Gossypium raimondii Gorai.008G128800 I 0.866
MDP0000859492 Malus domestica MDP0000859492 I 0.866
MDP0000729514 Malus domestica MDP0000729514 I 0.866
MDP0000242554 Malus domestica MDP0000242554 I 0.866
MDP0000224302 Malus domestica MDP0000224302 I 0.866
MDP0000900024 Malus domestica MDP0000900024 I 0.866
gene18651-v1.0-hybrid Fragaria vesca gene18651-v1.0-hybrid I 0.866
GSMUA_Achr1G18910_001 Musa acuminata GSMUA_Achr1G18910_001 I 0.866
Carubv10001082m.g Capsella rubella Carubv10001082m.g I 0.866
SapurV1A.0003s0670 Salix purpurea SapurV1A.0003s0670 I 0.866
Ciclev10019749m.g Citrus clementina Ciclev10019749m.g I 0.866
GLYMA16G02320 Glycine max GLYMA16G02320 I 0.866
GLYMA07G05740 Glycine max GLYMA07G05740 I 0.866
evm.TU.supercontig_141.19 Carica papaya evm.TU.supercontig_141.19 I 0.866
Eucgr.E00019 Eucalyptus grandis Eucgr.E00019 I 0.866
Ca_17603 Cicer arietinum Ca_17603 I 0.865
Pavir.Cb01851 Panicum virgatum Pavir.Cb01851 I 0.859
Pavir.Ca00449 Panicum virgatum Pavir.Ca00449 I 0.859
Sb09g008120 Sorghum bicolor Sb09g008120 I 0.859
Si021549m.g Setaria italica Si021549m.g I 0.859
GLYMA02G09670 Glycine max GLYMA02G09670 I 0.859
BRADI3G41940 Brachypodium distachyon BRADI3G41940 N 0.857
Cucsa.321840 Cucumis sativus Cucsa.321840 I 0.856
Cla008954 Citrullus lanatus Cla008954 I 0.856
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N 0.854
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N 0.851
Solyc10g009290.1 Solanum lycopersicum Solyc10g009290.1 I 0.849
PGSC0003DMG400005860 Solanum tuberosum PGSC0003DMG400005860 I 0.849
PGSC0003DMG400005528 Solanum tuberosum PGSC0003DMG400005528 I 0.849
Solyc08g008600.2 Solanum lycopersicum Solyc08g008600.2 I 0.849
MDP0000136498 Malus domestica MDP0000136498 I 0.847
Bra010178 Brassica rapa Bra010178 I 0.847
Bra013263 Brassica rapa Bra013263 I 0.847
Bra017523 Brassica rapa Bra017523 I 0.847
MDP0000029168 Malus domestica MDP0000029168 I 0.847
Gorai.003G182100 Gossypium raimondii Gorai.003G182100 I 0.847
GLYMA01G12740 Glycine max GLYMA01G12740 I 0.847
Ca_12352 Cicer arietinum Ca_12352 I 0.847
GLYMA01G02251 Glycine max GLYMA01G02251 I 0.847
gene10501-v1.0-hybrid Fragaria vesca gene10501-v1.0-hybrid I 0.847
Bra024998 Brassica rapa Bra024998 I 0.847
fgenesh2_kg.7__2520__AT4G17880.1 Arabidopsis lyrata fgenesh2_kg.7__2520__AT4G17880.1 I 0.847
Bra017527 Brassica rapa Bra017527 I 0.847
Bo9g065530 Brassica oleracea Bo9g065530 I 0.847
Thhalv10000808m.g Eutrema salsugineum Thhalv10000808m.g I 0.847
SapurV1A.0151s0080 Salix purpurea SapurV1A.0151s0080 I 0.847
MYC2 Arabidopsis thaliana AT1G32640 D 0.847
Thhalv10007075m.g Eutrema salsugineum Thhalv10007075m.g I 0.847
Thhalv10024688m.g Eutrema salsugineum Thhalv10024688m.g I 0.847
chr2.CM0177.830.nc Lotus japonicus chr2.CM0177.830.nc I 0.847
PK18474.1 Cannabis sativa PK18474.1 D 0.847
MYC4 Arabidopsis thaliana AT4G17880 D 0.847
MYC3 Arabidopsis thaliana AT5G46760 D 0.847
Bo8g028850 Brassica oleracea Bo8g028850 I 0.847
GLYMA09G33730 Glycine max GLYMA09G33730 I 0.847
Bo7g075710 Brassica oleracea Bo7g075710 I 0.847
Bo5g086990 Brassica oleracea Bo5g086990 I 0.847
Bo01130s010 Brassica oleracea Bo01130s010 I 0.847
Bo1g017990 Brassica oleracea Bo1g017990 I 0.847
Bo9g066680 Brassica oleracea Bo9g066680 I 0.847
GLYMA08G36720 Glycine max GLYMA08G36720 I 0.847
ATMYC2 Arabidopsis lyrata scaffold_103634.1 I 0.847
Bostr.3359s0090 Boechera stricta Bostr.3359s0090 I 0.847
scaffold_800152.1 Arabidopsis lyrata scaffold_800152.1 I 0.847
Solyc08g076930.1 Solanum lycopersicum Solyc08g076930.1 I 0.847
Bostr.30275s0255 Boechera stricta Bostr.30275s0255 I 0.847
Bostr.28243s0060 Boechera stricta Bostr.28243s0060 I 0.847
POPTR_0003s09090 Populus trichocarpa POPTR_0003s09090 I 0.847
mgf002775m Mimulus guttatus mgf002775m I 0.847
PGSC0003DMG400001161 Solanum tuberosum PGSC0003DMG400001161 I 0.847
PRUPE_ppa002404mg Prunus persica PRUPE_ppa002404mg I 0.847
Cagra.0751s0023 Capsella grandiflora Cagra.0751s0023 I 0.847
Pm023237 Prunus mume Pm023237 I 0.847
Ca_11514 Cicer arietinum Ca_11514 I 0.847
Carubv10004392m.g Capsella rubella Carubv10004392m.g I 0.847
Carubv10008586m.g Capsella rubella Carubv10008586m.g I 0.847
Carubv10028441m.g Capsella rubella Carubv10028441m.g I 0.847
PGSC0003DMG400017535 Solanum tuberosum PGSC0003DMG400017535 I 0.847
Cagra.7865s0024 Capsella grandiflora Cagra.7865s0024 I 0.847
MTR_5g030430 Medicago truncatula MTR_5g030430 I 0.847
Cagra.3356s0080 Capsella grandiflora Cagra.3356s0080 I 0.847
Cla006802 Citrullus lanatus Cla006802 I 0.846
Cla006801 Citrullus lanatus Cla006801 I 0.846
PK23618.1 Cannabis sativa PK23618.1 I 0.846
MDP0000160600 Malus domestica MDP0000160600 I 0.846
Bra024993 Brassica rapa Bra024993 I 0.846
Cucsa.120830 Cucumis sativus Cucsa.120830 I 0.846
MDP0000603546 Malus domestica MDP0000603546 I 0.846
Gorai.004G184800 Gossypium raimondii Gorai.004G184800 I 0.844
gene13705-v1.0-hybrid Fragaria vesca gene13705-v1.0-hybrid I 0.844
MTR_8g067280 Medicago truncatula MTR_8g067280 I 0.844
Bra017520 Brassica rapa Bra017520 I 0.844
GSMUA_Achr10G07470_001 Musa acuminata GSMUA_Achr10G07470_001 I 0.842
Gorai.007G059100 Gossypium raimondii Gorai.007G059100 N 0.842
Lus10005999.g Linum usitatissimum Lus10005999.g I 0.842
Cla007989 Citrullus lanatus Cla007989 I 0.842
MTR_4g097950 Medicago truncatula MTR_4g097950 I 0.841
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.841
Ca_09378 Cicer arietinum Ca_09378 I 0.841
PGSC0003DMG400030623 Solanum tuberosum PGSC0003DMG400030623 N 0.840
Solyc02g091820.1 Solanum lycopersicum Solyc02g091820.1 N 0.840