Cucsa.103610 (Cucumis sativus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cucsa.103610 T048153_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.850 0.694
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.848 0.571
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.103610.1 bHLH 90 138

Links

Other bHLH family TFs
Other Cucumis sativus TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla014287 Citrullus lanatus Cla014287 I 0.880
Cucsa.103620 Cucumis sativus Cucsa.103620 I 0.880
GSMUA_Achr8G26460_001 Musa acuminata GSMUA_Achr8G26460_001 I 0.878
Cla014286 Citrullus lanatus Cla014286 N 0.877
GLYMA01G40611 Glycine max GLYMA01G40611 I 0.876
MTR_5g014600 Medicago truncatula MTR_5g014600 I 0.874
Bra013128 Brassica rapa Bra013128 I 0.869
Cla014288 Citrullus lanatus Cla014288 I 0.868
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.867
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.866
Eucgr.H02396 Eucalyptus grandis Eucgr.H02396 I 0.856
POPTR_0007s14480 Populus trichocarpa POPTR_0007s14480 I 0.854
MTR_0246s0050 Medicago truncatula MTR_0246s0050 I 0.853
MTR_4g098035 Medicago truncatula MTR_4g098035 I 0.853
MDP0000159571 Malus domestica MDP0000159571 I 0.850
MDP0000170202 Malus domestica MDP0000170202 I 0.850
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.850
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.850
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.850
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.850
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.850
TCM_000894 Theobroma cacao TCM_000894 I 0.850
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.850
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.850
Bra030210 Brassica rapa Bra030210 I 0.850
Bra039924 Brassica rapa Bra039924 I 0.850
Bo4g150960 Brassica oleracea Bo4g150960 I 0.850
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.850
Bo3g088300 Brassica oleracea Bo3g088300 I 0.849
Cagra.0050s0048 Capsella grandiflora Cagra.0050s0048 I 0.848
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.848
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.848
Bostr.25993s0115 Boechera stricta Bostr.25993s0115 I 0.848
Aquca_014_00031 Aquilegia coerulea Aquca_014_00031 I 0.848
mgf018623m Mimulus guttatus mgf018623m I 0.848
mgf022967m Mimulus guttatus mgf022967m I 0.848
mgf023325m Mimulus guttatus mgf023325m I 0.848
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.848
Carubv10025360m.g Capsella rubella Carubv10025360m.g I 0.848
Ciclev10019816m.g Citrus clementina Ciclev10019816m.g I 0.848
chr1.CM0375.280.nd Lotus japonicus chr1.CM0375.280.nd I 0.848
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.848
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.848
Bo4g008180 Brassica oleracea Bo4g008180 I 0.848
Eucgr.E00047 Eucalyptus grandis Eucgr.E00047 I 0.848
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.848
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.848
Pm018355 Prunus mume Pm018355 I 0.848
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.848
Ciclev10019339m.g Citrus clementina Ciclev10019339m.g I 0.848
mgf011621m Mimulus guttatus mgf011621m I 0.848
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.848
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.848
cassava32975.m1 Manihot esculenta cassava32975.m1 I 0.848
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.848
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.848
29883.m002023 Ricinus communis 29883.m002023 I 0.848
28179.m000479 Ricinus communis 28179.m000479 I 0.848
29742.m001404 Ricinus communis 29742.m001404 I 0.848
29804.m001498 Ricinus communis 29804.m001498 I 0.848
cassava36709.valid.m1 Manihot esculenta cassava36709.valid.m1 I 0.848
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.848
Cucsa.259300 Cucumis sativus Cucsa.259300 I 0.848
mgf001638m Mimulus guttatus mgf001638m I 0.848
Eucgr.K03293 Eucalyptus grandis Eucgr.K03293 I 0.848
Pm020642 Prunus mume Pm020642 I 0.848
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.848
Pm021008 Prunus mume Pm021008 I 0.848
cassava46510.m1 Manihot esculenta cassava46510.m1 I 0.848
Cucsa.053540 Cucumis sativus Cucsa.053540 I 0.848
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.848
28179.m000478 Ricinus communis 28179.m000478 I 0.848
evm.TU.contig_45808 Carica papaya evm.TU.contig_45808 I 0.848
MDP0000502440 Malus domestica MDP0000502440 I 0.848
orange1.1g010728m.g Citrus sinensis orange1.1g010728m.g I 0.848
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.848
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.848
MDP0000406270 Malus domestica MDP0000406270 I 0.848
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.848
MDP0000291132 Malus domestica MDP0000291132 I 0.848
MDP0000318216 Malus domestica MDP0000318216 I 0.848
MDP0000386580 Malus domestica MDP0000386580 I 0.848
MDP0000401086 Malus domestica MDP0000401086 I 0.848
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.848
orange1.1g048817m.g Citrus sinensis orange1.1g048817m.g I 0.848
SapurV1A.0013s0270 Salix purpurea SapurV1A.0013s0270 I 0.848
SapurV1A.0013s0280 Salix purpurea SapurV1A.0013s0280 I 0.848
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.848
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.848
SapurV1A.0006s1070 Salix purpurea SapurV1A.0006s1070 I 0.848
SapurV1A.0003s1040 Salix purpurea SapurV1A.0003s1040 I 0.848
Pavir.Ea00030 Panicum virgatum Pavir.Ea00030 I 0.848
Pavir.Eb00041 Panicum virgatum Pavir.Eb00041 I 0.848
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.848
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.848
MDP0000279087 Malus domestica MDP0000279087 I 0.848
MDP0000229725 Malus domestica MDP0000229725 I 0.848
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.848
Cla021464 Citrullus lanatus Cla021464 I 0.848
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.848
Gorai.007G109300 Gossypium raimondii Gorai.007G109300 I 0.848
gene19143-v1.0-hybrid Fragaria vesca gene19143-v1.0-hybrid I 0.848
gene08231-v1.0-hybrid Fragaria vesca gene08231-v1.0-hybrid I 0.848
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.848
PK29179.1 Cannabis sativa PK29179.1 I 0.848
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.848
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.848
Gorai.007G143800 Gossypium raimondii Gorai.007G143800 I 0.848
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.848
PK00939.1 Cannabis sativa PK00939.1 I 0.848
MDP0000174149 Malus domestica MDP0000174149 I 0.848
MDP0000226497 Malus domestica MDP0000226497 I 0.848
Thhalv10001374m.g Eutrema salsugineum Thhalv10001374m.g I 0.848
PK09122.1 Cannabis sativa PK09122.1 I 0.848
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.848
PK11573.1 Cannabis sativa PK11573.1 I 0.848
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.848
Lus10005966.g Linum usitatissimum Lus10005966.g I 0.848
Lus10030243.g Linum usitatissimum Lus10030243.g I 0.848
SapurV1A.0378s0120 Salix purpurea SapurV1A.0378s0120 I 0.848
Pm002305 Prunus mume Pm002305 I 0.848
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.848
MLOC_69470 Hordeum vulgare MLOC_69470 I 0.848
MTR_7g096350 Medicago truncatula MTR_7g096350 I 0.848
MTR_7g117670 Medicago truncatula MTR_7g117670 I 0.848
MTR_8g027495 Medicago truncatula MTR_8g027495 I 0.848
MLOC_33189 Hordeum vulgare MLOC_33189 I 0.848
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.848
GSMUA_Achr8G26280_001 Musa acuminata GSMUA_Achr8G26280_001 I 0.848
GSMUA_Achr8G05350_001 Musa acuminata GSMUA_Achr8G05350_001 I 0.848
GSMUA_AchrUn_randomG01830_001 Musa acuminata GSMUA_AchrUn_randomG01830_001 I 0.848
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.848
LPERR01G07720 Leersia perrieri LPERR01G07720 I 0.848
OB01G18800 Oryza brachyantha OB01G18800 I 0.848
OBART01G08590 Oryza barthii OBART01G08590 I 0.848
AIB Arabidopsis thaliana AT2G46510 I 0.848
ONIVA01G11170 Oryza nivara ONIVA01G11170 I 0.848
OPUNC01G08460 Oryza punctata OPUNC01G08460 I 0.848
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.848
ORGLA01G0077100 Oryza glaberrima ORGLA01G0077100 I 0.848
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.848
OMERI01G08610 Oryza meridionalis OMERI01G08610 I 0.848
OBART03G32580 Oryza barthii OBART03G32580 I 0.848
OGLUM01G09830 Oryza glumaepatula OGLUM01G09830 I 0.848
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.848
OLONG_005869 Oryza longistaminata OLONG_005869 I 0.848
GSMUA_Achr6G35730_001 Musa acuminata GSMUA_Achr6G35730_001 I 0.848
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I 0.848
BGIOSGA015604 Oryza indica BGIOSGA015604 I 0.848
ATAIB Arabidopsis lyrata fgenesh2_kg.4__2868__AT2G46510.1 I 0.848
GLYMA03G41901 Glycine max GLYMA03G41901 I 0.848
GLYMA07G06090 Glycine max GLYMA07G06090 I 0.848
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.848
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.848
F775_26406 Aegilops tauschii F775_26406 I 0.848
Bo4g197150 Brassica oleracea Bo4g197150 I 0.848
Bra004532 Brassica rapa Bra004532 I 0.848
Bra039279 Brassica rapa Bra039279 I 0.848
BRADI2G08080 Brachypodium distachyon BRADI2G08080 I 0.848
GLYMA10G03950 Glycine max GLYMA10G03950 I 0.848
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.848
GSMUA_Achr10G22310_001 Musa acuminata GSMUA_Achr10G22310_001 I 0.848
GRMZM2G148723 Zea mays GRMZM2G148723 I 0.848
GSMUA_Achr1G14370_001 Musa acuminata GSMUA_Achr1G14370_001 I 0.848
GSMUA_Achr1G28110_001 Musa acuminata GSMUA_Achr1G28110_001 I 0.848
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.848
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.848
GRMZM2G076636 Zea mays GRMZM2G076636 I 0.848
GLYMA13G18131 Glycine max GLYMA13G18131 I 0.848
GLYMA16G02690 Glycine max GLYMA16G02690 I 0.848
GLYMA19G44570 Glycine max GLYMA19G44570 I 0.848
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.848
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.848
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.848
Traes_3B_5DC4D39A6 Triticum aestivum Traes_3B_5DC4D39A6 I 0.848
Traes_3AS_337600412 Triticum aestivum Traes_3AS_337600412 I 0.848
Traes_3DS_247FA5037 Triticum aestivum Traes_3DS_247FA5037 I 0.848
Traes_4AS_D95D10893 Triticum aestivum Traes_4AS_D95D10893 I 0.848
Traes_4DL_DA70DBAFC Triticum aestivum Traes_4DL_DA70DBAFC I 0.848
Traes_4BL_FD0D3B74A Triticum aestivum Traes_4BL_FD0D3B74A I 0.848
TCM_005131 Theobroma cacao TCM_005131 I 0.848
TCM_000895 Theobroma cacao TCM_000895 I 0.848
Si003963m.g Setaria italica Si003963m.g I 0.848
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.848
ORUFI01G09400 Oryza rufipogon ORUFI01G09400 I 0.848
Solyc01g096050.2 Solanum lycopersicum Solyc01g096050.2 I 0.848
Solyc06g083980.1 Solanum lycopersicum Solyc06g083980.1 I 0.848
TRIUR3_13265 Triticum urartu TRIUR3_13265 I 0.848
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.848
Cla000123 Citrullus lanatus Cla000123 I 0.848
Ca_17639 Cicer arietinum Ca_17639 I 0.848
Cla006102 Citrullus lanatus Cla006102 I 0.848
AMTR_s00021p00226670 Amborella trichopoda AMTR_s00021p00226670 I 0.848
AMTR_s00099p00127980 Amborella trichopoda AMTR_s00099p00127980 I 0.848
Ca_12209 Cicer arietinum Ca_12209 I 0.848
Ca_01324 Cicer arietinum Ca_01324 I 0.848
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.848
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.848
VIT_07s0141g01060 Vitis vinifera VIT_07s0141g01060 I 0.848
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.848
VIT_15s0046g00320 Vitis vinifera VIT_15s0046g00320 I 0.848
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.848
Si036393m.g Setaria italica Si036393m.g I 0.848
POPTR_0002s04310 Populus trichocarpa POPTR_0002s04310 I 0.848
POPTR_0002s17310 Populus trichocarpa POPTR_0002s17310 I 0.848
Sb03g000570 Sorghum bicolor Sb03g000570 I 0.848
POPTR_0005s24240 Populus trichocarpa POPTR_0005s24240 I 0.848
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.848
PGSC0003DMG400020066 Solanum tuberosum PGSC0003DMG400020066 I 0.848
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.848
OS01G0235700 Oryza sativa OS01G0235700 D 0.848
OS03G0725800 Oryza sativa OS03G0725800 I 0.848
PGSC0003DMG400000232 Solanum tuberosum PGSC0003DMG400000232 I 0.848
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.848
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.848
POPTR_0014s09520 Populus trichocarpa POPTR_0014s09520 I 0.848
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.848
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.848
PRUPE_ppa002985mg Prunus persica PRUPE_ppa002985mg I 0.848
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.848
PRUPE_ppa008004mg Prunus persica PRUPE_ppa008004mg I 0.848
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.847
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.847
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.847
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.847
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.846
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.846
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.846
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.844
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.844
e_gw1.11.52.1 Physcomitrella patens e_gw1.11.52.1 I 0.844
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.844
Lus10024871.g Linum usitatissimum Lus10024871.g I 0.844
Lus10018787.g Linum usitatissimum Lus10018787.g I 0.844
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.844
TCM_006357 Theobroma cacao TCM_006357 I 0.844
orange1.1g038298m.g Citrus sinensis orange1.1g038298m.g I 0.842
Ciclev10023770m.g Citrus clementina Ciclev10023770m.g I 0.842