Cucsa.143260 (Cucumis sativus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cucsa.143260 T048175_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G42280
M06733_2.00
Arabidopsis thaliana
DNCMACTTGYH

DRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH130_col_a
0.879 0.941
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH

DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.856 0.902
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN

NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.856 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.143260.1 bHLH 366 416
Cucsa.143260.2 bHLH 366 416
Cucsa.143260.3 bHLH 366 416
Cucsa.143260.4 bHLH 366 416

Links

Other bHLH family TFs
Other Cucumis sativus TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30169.m006403 Ricinus communis 30169.m006403 I 0.879
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.879
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.851
BHLH122 Arabidopsis thaliana AT1G51140 D 0.856
Bo4g015860 Brassica oleracea Bo4g015860 I 0.914
Bo4g191390 Brassica oleracea Bo4g191390 I 0.856
Bo6g024810 Brassica oleracea Bo6g024810 I 0.856
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.858
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.856
Bra004678 Brassica rapa Bra004678 I 0.914
Bra016886 Brassica rapa Bra016886 I 0.856
Bra018896 Brassica rapa Bra018896 I 0.856
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.851
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.902
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.856
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.879
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.856
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.879
Ca_02662 Cicer arietinum Ca_02662 I 0.856
Ca_07284 Cicer arietinum Ca_07284 I 0.846
Ca_14223 Cicer arietinum Ca_14223 I 0.856
Ca_18899 Cicer arietinum Ca_18899 I 0.914
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.856
Cla006394 Citrullus lanatus Cla006394 I 0.914
estExt_fgenesh1_pg.C_2130035 Physcomitrella patens estExt_fgenesh1_pg.C_2130035 N 0.863
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.856
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.844
e_gw1.272.41.1 Physcomitrella patens e_gw1.272.41.1 I 0.845
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I 0.893
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.856
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.856
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.856
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.856
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.856
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.856
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.844
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.902
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.902
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.844
GRMZM5G879527 Zea mays GRMZM5G879527 N 0.872
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.844
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.856
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.851
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.867
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.867
MDP0000307685 Malus domestica MDP0000307685 I 0.879
mgf016092m Mimulus guttatus mgf016092m I 0.914
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.851
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.902
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.914
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.856
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.914
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.840
OB04G24170 Oryza brachyantha OB04G24170 I 0.851
OBART04G16900 Oryza barthii OBART04G16900 I 0.851
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.851
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.851
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.851
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.851
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.856
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.851
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.851
OS04G0489600 Oryza sativa OS04G0489600 I 0.851
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.902
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.844
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.902
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.902
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.844
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.844
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.902
PK20089.1 Cannabis sativa PK20089.1 I 0.856
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.879
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.879
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.844
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.902
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.879
Si013950m.g Setaria italica Si013950m.g I 0.902
Si029614m.g Setaria italica Si029614m.g I 0.844
Si030166m.g Setaria italica Si030166m.g I 0.902
TCM_040564 Theobroma cacao TCM_040564 I 0.856
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.856
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.902
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.879