CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.213230
(
Cucumis sativus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cucsa.213230
T048198_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK20225.1
M01128_2.00
Cannabis sativa
NCACGTGVN
NBCACGTGN
PBM
Lambert et al.(2019)
pTH11274
0.840
0.833
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.213230.1
bHLH
66
114
LKNHSEAERRRRERINSHLSTLRGLVPCPLKRDKATLLAEVVRQVKELK
Links
Other
bHLH
family TFs
Other
Cucumis sativus
TFs
99 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla019977
Citrullus lanatus
Cla019977
I
0.914
Eucgr.E02743
Eucalyptus grandis
Eucgr.E02743
I
0.901
Bostr.9345s0019
Boechera stricta
Bostr.9345s0019
N
0.878
Thhalv10017546m.g
Eutrema salsugineum
Thhalv10017546m.g
N
0.878
Cagra.0578s0007
Capsella grandiflora
Cagra.0578s0007
N
0.878
SapurV1A.0189s0140
Salix purpurea
SapurV1A.0189s0140
N
0.878
Cagra.1642s0077
Capsella grandiflora
Cagra.1642s0077
N
0.878
Carubv10023903m.g
Capsella rubella
Carubv10023903m.g
N
0.878
Carubv10017947m.g
Capsella rubella
Carubv10017947m.g
N
0.878
Traes_5BL_CBFAD4B59
Triticum aestivum
Traes_5BL_CBFAD4B59
N
0.878
Thhalv10006410m.g
Eutrema salsugineum
Thhalv10006410m.g
N
0.878
Bo4g012960
Brassica oleracea
Bo4g012960
N
0.878
Bo3g035410
Brassica oleracea
Bo3g035410
N
0.878
BHLH106
Arabidopsis thaliana
AT2G41130
N
0.878
Bra004599
Brassica rapa
Bra004599
N
0.878
Bo4g190700
Brassica oleracea
Bo4g190700
N
0.878
Bra016951
Brassica rapa
Bra016951
N
0.878
Bo4g112750
Brassica oleracea
Bo4g112750
N
0.875
Bra014672
Brassica rapa
Bra014672
N
0.875
cassava32077.m1
Manihot esculenta
cassava32077.m1
I
0.870
VIT_14s0068g01580
Vitis vinifera
VIT_14s0068g01580
I
0.870
SapurV1A.1185s0010
Salix purpurea
SapurV1A.1185s0010
I
0.869
SapurV1A.1821s0030
Salix purpurea
SapurV1A.1821s0030
I
0.869
Gorai.009G163400
Gossypium raimondii
Gorai.009G163400
I
0.867
cassava18812.valid.m1
Manihot esculenta
cassava18812.valid.m1
I
0.867
TCM_029711
Theobroma cacao
TCM_029711
I
0.867
BRADI2G07050
Brachypodium distachyon
BRADI2G07050
N
0.864
Aquca_081_00012
Aquilegia coerulea
Aquca_081_00012
I
0.864
OS01G0218100
Oryza sativa
OS01G0218100
I
0.855
ORUFI01G08040
Oryza rufipogon
ORUFI01G08040
I
0.855
ONIVA01G09540
Oryza nivara
ONIVA01G09540
I
0.855
OGLUM01G08450
Oryza glumaepatula
OGLUM01G08450
I
0.855
OMERI01G07330
Oryza meridionalis
OMERI01G07330
I
0.855
OB01G17480
Oryza brachyantha
OB01G17480
I
0.855
BGIOSGA003013
Oryza indica
BGIOSGA003013
I
0.855
ORGLA01G0065100
Oryza glaberrima
ORGLA01G0065100
I
0.855
OPUNC01G07130
Oryza punctata
OPUNC01G07130
I
0.855
scaffold_402920.1
Arabidopsis lyrata
scaffold_402920.1
N
0.854
Eucgr.A02230
Eucalyptus grandis
Eucgr.A02230
N
0.854
AMTR_s00007p00170710
Amborella trichopoda
AMTR_s00007p00170710
I
0.852
Bostr.20505s0075
Boechera stricta
Bostr.20505s0075
N
0.851
SapurV1A.0159s0020
Salix purpurea
SapurV1A.0159s0020
N
0.851
PK23387.1
Cannabis sativa
PK23387.1
N
0.851
cassava7163.valid.m1
Manihot esculenta
cassava7163.valid.m1
N
0.851
Pavir.J24868
Panicum virgatum
Pavir.J24868
N
0.851
Cucsa.340200
Cucumis sativus
Cucsa.340200
N
0.851
chr1.CM0816.330.nc
Lotus japonicus
chr1.CM0816.330.nc
N
0.851
MDP0000138102
Malus domestica
MDP0000138102
N
0.851
evm.TU.supercontig_92.83
Carica papaya
evm.TU.supercontig_92.83
N
0.851
gene14814-v1.0-hybrid
Fragaria vesca
gene14814-v1.0-hybrid
N
0.851
Gorai.007G352300
Gossypium raimondii
Gorai.007G352300
N
0.851
Ciclev10012626m.g
Citrus clementina
Ciclev10012626m.g
N
0.851
Lus10018020.g
Linum usitatissimum
Lus10018020.g
N
0.851
orange1.1g026479m.g
Citrus sinensis
orange1.1g026479m.g
N
0.851
MDP0000213892
Malus domestica
MDP0000213892
N
0.851
Pavir.J02699
Panicum virgatum
Pavir.J02699
N
0.851
Ca_07159
Cicer arietinum
Ca_07159
N
0.851
30180.m001071
Ricinus communis
30180.m001071
N
0.851
ORGLA03G0352000
Oryza glaberrima
ORGLA03G0352000
N
0.851
PGSC0003DMG400008378
Solanum tuberosum
PGSC0003DMG400008378
N
0.851
POPTR_0006s03550
Populus trichocarpa
POPTR_0006s03550
N
0.851
POPTR_0016s03460
Populus trichocarpa
POPTR_0016s03460
N
0.851
GSMUA_Achr8G23980_001
Musa acuminata
GSMUA_Achr8G23980_001
N
0.851
GRMZM2G027068
Zea mays
GRMZM2G027068
N
0.851
BRADI1G04280
Brachypodium distachyon
BRADI1G04280
N
0.851
GLYMA02G23590
Glycine max
GLYMA02G23590
N
0.851
GLYMA03G28150
Glycine max
GLYMA03G28150
N
0.851
GLYMA19G30910
Glycine max
GLYMA19G30910
N
0.851
PRUPE_ppa011532mg
Prunus persica
PRUPE_ppa011532mg
N
0.851
OS03G0811400
Oryza sativa
OS03G0811400
N
0.851
Solyc10g078380.1
Solanum lycopersicum
Solyc10g078380.1
N
0.851
TCM_024016
Theobroma cacao
TCM_024016
N
0.851
Cla017413
Citrullus lanatus
Cla017413
N
0.851
Pm025589
Prunus mume
Pm025589
N
0.851
Sb01g003830
Sorghum bicolor
Sb01g003830
N
0.851
Gorai.011G034000
Gossypium raimondii
Gorai.011G034000
I
0.849
MDP0000249969
Malus domestica
MDP0000249969
I
0.848
29900.m001610
Ricinus communis
29900.m001610
I
0.846
Pavir.Ea00157
Panicum virgatum
Pavir.Ea00157
I
0.843
GSMUA_Achr2G20040_001
Musa acuminata
GSMUA_Achr2G20040_001
N
0.843
GRMZM2G166642
Zea mays
GRMZM2G166642
I
0.843
Pavir.Eb00095
Panicum virgatum
Pavir.Eb00095
I
0.843
TRAES3BF011300020CFD_g
Triticum aestivum
TRAES3BF011300020CFD_g
I
0.843
gene29828-v1.0-hybrid
Fragaria vesca
gene29828-v1.0-hybrid
I
0.843
Sb03g001730
Sorghum bicolor
Sb03g001730
I
0.843
MLOC_64390
Hordeum vulgare
MLOC_64390
I
0.843
GRMZM2G016039
Zea mays
GRMZM2G016039
I
0.843
GLYMA02G15780
Glycine max
GLYMA02G15780
I
0.840
Aquca_004_00748
Aquilegia coerulea
Aquca_004_00748
I
0.840
GLYMA07G32690
Glycine max
GLYMA07G32690
I
0.840
PK20225.1
Cannabis sativa
PK20225.1
D
0.840
orange1.1g024670m.g
Citrus sinensis
orange1.1g024670m.g
I
0.840
Ciclev10016289m.g
Citrus clementina
Ciclev10016289m.g
I
0.840
evm.TU.supercontig_7.53
Carica papaya
evm.TU.supercontig_7.53
I
0.840
Lus10001885.g
Linum usitatissimum
Lus10001885.g
I
0.840
MTR_4g087920
Medicago truncatula
MTR_4g087920
I
0.840
Ca_06386
Cicer arietinum
Ca_06386
I
0.840
VIT_08s0040g01240
Vitis vinifera
VIT_08s0040g01240
I
0.840
Eucgr.D00509
Eucalyptus grandis
Eucgr.D00509
I
0.839