Cucsa.284270 (Cucumis sativus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cucsa.284270 T048217_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN

NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.914 0.961
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC

GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.914 0.922
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH

DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.902 0.941
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW

WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.902 0.922
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY

RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.902 0.922
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB

VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.902 0.843
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC

GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.888 0.882
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN

NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.875 0.824
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB

VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.875 0.824
BEE2
M01708_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8094
0.864 0.784
AT2G18300
M01702_2.00
Arabidopsis thaliana
NBCACGTGCNNN

NNNGCACGTGVN
PBM
Weirauch et al.(2014)
pTH7289
0.864 0.765
AT2G18300
M06729_2.00
Arabidopsis thaliana
ACTGGT

ACCAGT
Dap-seq
OMalley et al.(2016)
bHLH64_col_a
0.864 0.765
PK05923.1
M01121_2.00
Cannabis sativa
NNNNNNN

NNNNNNN
PBM
Lambert et al.(2019)
pTH11368
0.842 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.284270.1 bHLH 376 426
Cucsa.284270.2 bHLH 375 425

Links

Other bHLH family TFs
Other Cucumis sativus TFs

902 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
abi4 Zea mays GRMZM2G093595 D 0.000
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I 0.000
Carubv10025253m.g Capsella rubella Carubv10025253m.g I 0.000
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I 0.000
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I 0.000
mgf024416m Mimulus guttatus mgf024416m I 0.000
cassava41265.m1 Manihot esculenta cassava41265.m1 I 0.000
cassava20838.m1 Manihot esculenta cassava20838.m1 I 0.000
29814.m000739 Ricinus communis 29814.m000739 I 0.000
Pm018953 Prunus mume Pm018953 I 0.000
Cla006708 Citrullus lanatus Cla006708 I 0.000
Ca_12465 Cicer arietinum Ca_12465 I 0.000
ABI4 Vitis vinifera VIT_13s0067g01400 I 0.000
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I 0.000
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I 0.000
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I 0.000
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I 0.000
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I 0.000
Pavir.J38620 Panicum virgatum Pavir.J38620 I 0.000
Pavir.J33237 Panicum virgatum Pavir.J33237 I 0.000
Pavir.J29572 Panicum virgatum Pavir.J29572 I 0.000
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I 0.000
MDP0000628484 Malus domestica MDP0000628484 I 0.000
MDP0000225376 Malus domestica MDP0000225376 I 0.000
Lus10040944.g Linum usitatissimum Lus10040944.g I 0.000
Lus10009834.g Linum usitatissimum Lus10009834.g I 0.000
TCM_042471 Theobroma cacao TCM_042471 I 0.000
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I 0.000
Sb09g016550 Sorghum bicolor Sb09g016550 I 0.000
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I 0.000
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I 0.000
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I 0.000
GLYMA14G06290 Glycine max GLYMA14G06290 I 0.000
GLYMA02G43240 Glycine max GLYMA02G43240 I 0.000
Bra004978 Brassica rapa Bra004978 I 0.000
Bra000178 Brassica rapa Bra000178 I 0.000
Bo4g025410 Brassica oleracea Bo4g025410 I 0.000
Bo3g034810 Brassica oleracea Bo3g034810 I 0.000
BGIOSGA018232 Oryza indica BGIOSGA018232 I 0.000
ABI4 Arabidopsis thaliana AT2G40220 I 0.000
LPERR05G10140 Leersia perrieri LPERR05G10140 I 0.000
MTR_5g082950 Medicago truncatula MTR_5g082950 I 0.000
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I 0.000
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I 0.000
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I 0.000
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I 0.000
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I 0.000
ABI4 Oryza sativa OS05G0351200 I 0.000
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I 0.000
OPUNC05G11000 Oryza punctata OPUNC05G11000 I 0.000
ONIVA05G13490 Oryza nivara ONIVA05G13490 I 0.000
OMERI05G11540 Oryza meridionalis OMERI05G11540 I 0.000
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I 0.000
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I 0.000