CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw1.34.393.1
(
Physcomitrella patens
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
e_gw1.34.393.1
T048271_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.858
0.816
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.858
0.816
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.857
0.816
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.34.393.1
bHLH
24
72
HPRSIAERNRRSRISERMKKLQDLVPNMDKQTNTADMLDEAVEYVKHLQ
Links
Other
bHLH
family TFs
Other
Physcomitrella patens
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.877
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.869
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.869
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.869
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.869
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.869
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.869
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.869
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.869
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.869
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.869
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.869
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.869
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.869
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.869
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.869
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.869
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.869
MDP0000180376
Malus domestica
MDP0000180376
I
0.869
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.869
mgf016734m
Mimulus guttatus
mgf016734m
I
0.869
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.869
TCM_024842
Theobroma cacao
TCM_024842
I
0.869
Cla017792
Citrullus lanatus
Cla017792
I
0.869
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.869
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.869
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.869
PK18038.1
Cannabis sativa
PK18038.1
I
0.869
29216.m000261
Ricinus communis
29216.m000261
I
0.869
Pm025821
Prunus mume
Pm025821
I
0.869
Pm000447
Prunus mume
Pm000447
I
0.869
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.869
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.869
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.869
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.869
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.869
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.869
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.869
cassava36544.valid.m1
Manihot esculenta
cassava36544.valid.m1
I
0.866
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.866
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.866
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.866
30152.m002405
Ricinus communis
30152.m002405
I
0.866
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.866
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.866
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.866
TCM_005925
Theobroma cacao
TCM_005925
I
0.866
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.858
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.858
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.858
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.858
TCM_036484
Theobroma cacao
TCM_036484
I
0.858
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.858
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.858
Pm004181
Prunus mume
Pm004181
I
0.858
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.858
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.858
Bra036760
Brassica rapa
Bra036760
I
0.858
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.858
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.858
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.858
Bra028088
Brassica rapa
Bra028088
I
0.858
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.858
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.858
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.858
PK06301.1
Cannabis sativa
PK06301.1
I
0.858
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.858
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.858
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.858
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.858
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.858
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.858
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.858
mgf002701m
Mimulus guttatus
mgf002701m
I
0.858
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.858
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.858
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.858
MDP0000269890
Malus domestica
MDP0000269890
I
0.858
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.858
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.858
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.858
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.857
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.857
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.857
OBART09G14660
Oryza barthii
OBART09G14660
I
0.857
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.857
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.857
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.857
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.857
OBART08G19860
Oryza barthii
OBART08G19860
I
0.857
OB08G26810
Oryza brachyantha
OB08G26810
I
0.857
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.857
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.857
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.857
F775_24151
Aegilops tauschii
F775_24151
I
0.857
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.857
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.857
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.857
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.857
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.857
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.857
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.857
OS09G0487900
Oryza sativa
OS09G0487900
I
0.857
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.857
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.857
OS08G0506700
Oryza sativa
OS08G0506700
D
0.857
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.857
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.857
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.856
Eucgr.G03396
Eucalyptus grandis
Eucgr.G03396
I
0.854
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.854
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.854
SapurV1A.1898s0040
Salix purpurea
SapurV1A.1898s0040
I
0.854
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.854
AMTR_s00070p00149100
Amborella trichopoda
AMTR_s00070p00149100
I
0.847
GLYMA19G32600
Glycine max
GLYMA19G32600
I
0.842
Sb04g025260
Sorghum bicolor
Sb04g025260
I
0.841
Pavir.J08536
Panicum virgatum
Pavir.J08536
I
0.841
BGIOSGA008576
Oryza indica
BGIOSGA008576
I
0.841
Si010513m.g
Setaria italica
Si010513m.g
I
0.841
Sb06g020810
Sorghum bicolor
Sb06g020810
I
0.841
Pavir.Gb01377
Panicum virgatum
Pavir.Gb01377
I
0.841
GRMZM2G437481
Zea mays
GRMZM2G437481
I
0.841
LPERR02G18900
Leersia perrieri
LPERR02G18900
I
0.841
ONIVA02G26110
Oryza nivara
ONIVA02G26110
I
0.841
ORUFI02G24640
Oryza rufipogon
ORUFI02G24640
I
0.841
OLONG_009256
Oryza longistaminata
OLONG_009256
I
0.841
OMERI02G22740
Oryza meridionalis
OMERI02G22740
I
0.841
OBART02G23210
Oryza barthii
OBART02G23210
I
0.841
OB02G30670
Oryza brachyantha
OB02G30670
I
0.841
Pavir.Ab02229
Panicum virgatum
Pavir.Ab02229
I
0.841
ORGLA02G0200100
Oryza glaberrima
ORGLA02G0200100
I
0.841
OPUNC02G21170
Oryza punctata
OPUNC02G21170
I
0.841
Pavir.Ga01365
Panicum virgatum
Pavir.Ga01365
I
0.841
orange1.1g016638m.g
Citrus sinensis
orange1.1g016638m.g
I
0.840
Ciclev10031622m.g
Citrus clementina
Ciclev10031622m.g
I
0.840
gene26967-v1.0-hybrid
Fragaria vesca
gene26967-v1.0-hybrid
I
0.840
GLYMA02G29830
Glycine max
GLYMA02G29830
I
0.839