estExt_GenewiseH_1.C_3210010 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 estExt_GenewiseH_1.C_3210010 T048481_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PTF1A
M04156_2.00
Homo sapiens
AACAGCTGACRB

VYGTCAGCTGTT
SELEX
Yin et al.(2017)
PTF1A_eDBD_HT-SELEX
0.914 0.904
PTF1A
M08736_2.00
Homo sapiens
SCAGCTGBYNBNNYYYHN

NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_HUMAN.H11MO.0.B
0.914 0.904
Ptf1a
M08757_2.00
Mus musculus
SCAGCTGBYNBNNYYYHN

NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_MOUSE.H11MO.0.A
0.914 0.904
Ptf1a
M09470_2.00
Mus musculus
NVVCASSTGB

VCASSTGBBN
Misc
Heinz et al.(2010)
Panc1-Ptf1a_GSE47459
0.914 0.904
PTF1A
M04157_2.00
Homo sapiens
AMCAGCTGACRB

VYGTCAGCTGKT
SELEX
Yin et al.(2017)
PTF1A_eDBD_Methyl-HT-SELEX
0.914 0.904
Fer1
M03620_2.00
Drosophila melanogaster
VDCASCTGHY

RDCAGSTGHB
SELEX
Nitta et al.(2015)
Fer1_1
0.894 0.865
Fer1
M05990_2.00
Drosophila melanogaster
HVCASMTGWCV

BGWCAKSTGBD
B1H
Zhu et al.(2011)
Fer1_da_SANGER_10_FBgn0037475
0.894 0.865
Fer1
M05991_2.00
Drosophila melanogaster
WYRHCAGCTGACG

CGTCAGCTGDYRW
B1H
Zhu et al.(2011)
Fer1_SANGER_5_FBgn0037475
0.894 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_GenewiseH_1.C_3210010 bHLH 66 118

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O5_01148 Cladophialophora psammophila A1O5_01148 N 0.000
G647_09982 Cladophialophora carrionii G647_09982 N 0.000
PV04_00078 Capronia semiimmersa PV04_00078 N 0.000
PV07_05673 Cladophialophora immunda PV07_05673 N 0.000
Z517_06521 Fonsecaea pedrosoi Z517_06521 N 0.000