estExt_gwp.C_290160 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 estExt_gwp.C_290160 T048486_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Myf6
M00120_2.00
Mus musculus
NCRNNTGNY

RNCANNYGN
PBM
Badis et al.(2009)
Myf6_3824
0.841 0.769
Myf6
M01742_2.00
Mus musculus
RACAGHTGH

DCADCTGTY
PBM
Weirauch et al.(2014)
pTH5099
0.841 0.769
MYF6
M02780_2.00
Homo sapiens
AACARCTGTY

RACAGYTGTT
SELEX
Jolma et al.(2013)
MYF6_1
0.841 0.769
MYF6
M04084_2.00
Homo sapiens
BRHCASSTGWCR

YGWCASSTGDYV
SELEX
Yin et al.(2017)
MYF6_eDBD_HT-SELEX_1
0.841 0.769
MYF6
M04085_2.00
Homo sapiens
NRACASSTGWYV

BRWCASSTGTYN
SELEX
Yin et al.(2017)
MYF6_eDBD_HT-SELEX_2
0.841 0.769
MYF6
M05831_2.00
Homo sapiens
BRACAKNTGNY

RNCANMTGTYV
SMiLE-seq
Isakova et al.(2017)
MYF6
0.841 0.769
MYF6
M08717_2.00
Homo sapiens
CASCTGC

GCAGSTG
Misc
Kulakovskiy et al.(2013)
MYF6_HUMAN.H11MO.0.C
0.841 0.769
Myf6
M08767_2.00
Mus musculus
CASCTGC

GCAGSTG
Misc
Kulakovskiy et al.(2013)
MYF6_MOUSE.H11MO.0.C
0.841 0.769
MYF6
M09820_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MRF4_Q3
0.841 0.769
MYF6
M04086_2.00
Homo sapiens
BRHCASSTGWCR

YGWCASSTGDYV
SELEX
Yin et al.(2017)
MYF6_eDBD_Methyl-HT-SELEX_1
0.841 0.769
MYF6
M04087_2.00
Homo sapiens
BAACASSTGWYV

BRWCASSTGTTV
SELEX
Yin et al.(2017)
MYF6_eDBD_Methyl-HT-SELEX_2
0.841 0.769
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp.C_290160 bHLH 80 131

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_fgenesh2_pg.C_2260029 Branchiostoma floridae estExt_fgenesh2_pg.C_2260029 I 0.914
CLEC002330 Cimex lectularius CLEC002330 I 0.864
nRc.2.0.1.g24248 Romanomermis culicivorax nRc.2.0.1.g24248 I 0.864
D918_04086 Trichuris suis D918_04086 I 0.864
EFV52759 Trichinella spiralis EFV52759 I 0.864
D917_06339 Trichinella nativa D917_06339 I 0.864
SBAD_0001285401 Soboliphyme baturini SBAD_0001285401 I 0.864
myod1 Tetraodon nigroviridis ENSTNIG00000002808 I 0.864
SPU_021119 Strongylocentrotus purpuratus SPU_021119 I 0.864
Sakowv30008488m.g Saccoglossus kowalevskii Sakowv30008488m.g I 0.864
TTRE_0000002701 Trichuris trichiura TTRE_0000002701 I 0.864
TMUE_s0045001800 Trichuris muris TMUE_s0045001800 I 0.864
RPRC009735 Rhodnius prolixus RPRC009735 I 0.864
Smp_167400 Schistosoma mansoni Smp_167400 I 0.851
A_07871 Schistosoma haematobium A_07871 I 0.851
csin100742 Clonorchis sinensis csin100742 I 0.851
T265_10140 Opisthorchis viverrini T265_10140 I 0.851
ECPE_0001678601 Echinostoma caproni ECPE_0001678601 I 0.851
D915_09890 Fasciola hepatica D915_09890 I 0.851
TRE_0000306101 Trichobilharzia regenti TRE_0000306101 I 0.851
myf6 Tetraodon nigroviridis ENSTNIG00000011407 I 0.844
ENSXMAG00000007430 Xiphophorus maculatus ENSXMAG00000007430 I 0.843
ENSONIG00000010796 Oreochromis niloticus ENSONIG00000010796 I 0.843
myod1 Oryzias latipes ENSORLG00000000694 I 0.843
ENSONIG00000000077 Oreochromis niloticus ENSONIG00000000077 I 0.843
Brh_R000054 Buceros rhinoceros Brh_R000054 I 0.843
ENSXMAG00000017496 Xiphophorus maculatus ENSXMAG00000017496 I 0.843
MYF5 Monodelphis domestica ENSMODG00000020478 I 0.843
ENSPSIG00000012000 Pelodiscus sinensis ENSPSIG00000012000 I 0.843
Alligator_sinensis_CCG017419.1 Alligator sinensis Alligator_sinensis_CCG017419.1 I 0.843
MYF5 Otolemur garnettii ENSOGAG00000001039 I 0.843
MYF5 Ornithorhynchus anatinus ENSOANG00000004853 I 0.843
MYF5 Gallus gallus ENSGALG00000028091 I 0.843
ENSFALG00000010507 Ficedula albicollis ENSFALG00000010507 I 0.843
myod1 Gasterosteus aculeatus ENSGACG00000008444 I 0.843
myf5 Danio rerio ENSDARG00000007277 I 0.843
ENSAPLG00000001124 Anas platyrhynchos ENSAPLG00000001124 I 0.843
ENSAMXG00000000428 Astyanax mexicanus ENSAMXG00000000428 I 0.843
ENSAMXG00000017040 Astyanax mexicanus ENSAMXG00000017040 I 0.843
myod1 Gasterosteus aculeatus ENSGACG00000017350 I 0.843
ENSSHAG00000013391 Sarcophilus harrisii ENSSHAG00000013391 I 0.843
ENSMEUG00000010628 Macropus eugenii ENSMEUG00000010628 I 0.843
ENSMGAG00000011091 Meleagris gallopavo ENSMGAG00000011091 I 0.843
ENSPFOG00000013532 Poecilia formosa ENSPFOG00000013532 I 0.843
ENSPFOG00000017488 Poecilia formosa ENSPFOG00000017488 I 0.843
myf5 Oryzias latipes ENSORLG00000016257 I 0.843
ENSTGUG00000007755 Taeniopygia guttata ENSTGUG00000007755 I 0.843
myf6 Takifugu rubripes ENSTRUG00000010842 I 0.841
ENSTSYG00000003275 Tarsius syrichta ENSTSYG00000003275 I 0.841
MYF6 Tursiops truncatus ENSTTRG00000014689 I 0.841
MYF6 Vicugna pacos ENSVPAG00000001926 I 0.841
ENSXMAG00000017492 Xiphophorus maculatus ENSXMAG00000017492 I 0.841
Myotis_brandtii_MYF6_10034130 Myotis brandtii Myotis_brandtii_MYF6_10034130 I 0.841
ABU42126 Xenopus laevis ABU42126 I 0.841
AAO11649 Xenopus laevis AAO11649 I 0.841
myf6.L Xenopus laevis XB-GENE-6252334 I 0.841
myf6 Xenopus tropicalis XB-GENE-998203 I 0.841
myf6.S Xenopus laevis XB-GENE-998208 I 0.841
Pvit_10244 Pogona vitticeps Pvit_10244 I 0.841
Gfo_R003967 Geospiza fortis Gfo_R003967 I 0.841
Afo_R014067 Aptenodytes forsteri Afo_R014067 I 0.841
Alligator_sinensis_CCG017418.1 Alligator sinensis Alligator_sinensis_CCG017418.1 I 0.841
ENSP00000228641-D1 Bos grunniens ENSP00000228641-D1 I 0.841
ENSP00000228641 Macaca fascicularis ENSP00000228641 I 0.841
Aan_R006110 Calypte anna Aan_R006110 I 0.841
ENSPPYG00000004799 Pongo abelii ENSPPYG00000004799 I 0.841
MYF6 Gallus gallus ENSGALG00000010936 I 0.841
myf6 Gasterosteus aculeatus ENSGACG00000020008 I 0.841
MYF6 Homo sapiens ENSG00000111046 D 0.841
MYF6 Felis catus ENSFCAG00000015010 I 0.841
MYF6 Gorilla gorilla ENSGGOG00000004369 I 0.841
MYF6 Loxodonta africana ENSLAFG00000016476 I 0.841
MYF6 Myotis lucifugus ENSMLUG00000004940 I 0.841
MYF6 Microcebus murinus ENSMICG00000004274 I 0.841
ENSMEUG00000010618 Macropus eugenii ENSMEUG00000010618 I 0.841
ENSFALG00000010503 Ficedula albicollis ENSFALG00000010503 I 0.841
MYF6 Equus caballus ENSECAG00000018919 I 0.841
MYF6 Bos taurus ENSBTAG00000014003 I 0.841
ENSAPLG00000002254 Anas platyrhynchos ENSAPLG00000002254 I 0.841
ENSAMEG00000013207 Ailuropoda melanoleuca ENSAMEG00000013207 I 0.841
MYF6 Anolis carolinensis ENSACAG00000022851 I 0.841
MYF6 Canis familiaris ENSCAFG00000005805 I 0.841
MYF6 Callithrix jacchus ENSCJAG00000019339 I 0.841
MYF6 Dasypus novemcinctus ENSDNOG00000019387 I 0.841
ENSCSAG00000003893 Chlorocebus sabaeus ENSCSAG00000003893 I 0.841
ENSCPOG00000007763 Cavia porcellus ENSCPOG00000007763 I 0.841
MYF6 Macaca mulatta ENSMMUG00000011667 I 0.841
MYF6 Monodelphis domestica ENSMODG00000020477 I 0.841
MYF6 Pteropus vampyrus ENSPVAG00000003335 I 0.841
MYF6 Pan troglodytes ENSPTRG00000005260 I 0.841
ENSPSIG00000012468 Pelodiscus sinensis ENSPSIG00000012468 I 0.841
ENSPFOG00000017498 Poecilia formosa ENSPFOG00000017498 I 0.841
Myf6 Rattus norvegicus ENSRNOG00000004878 I 0.841
MYF6 Sorex araneus ENSSARG00000008211 I 0.841
ENSSTOG00000015808 Ictidomys tridecemlineatus ENSSTOG00000015808 I 0.841
MYF6 Sus scrofa ENSSSCG00000026533 I 0.841
ENSSHAG00000013331 Sarcophilus harrisii ENSSHAG00000013331 I 0.841
MYF6 Procavia capensis ENSPCAG00000001692 I 0.841
ENSPANG00000007910 Papio anubis ENSPANG00000007910 I 0.841
MYF6 Ornithorhynchus anatinus ENSOANG00000004854 I 0.841
ENSNLEG00000005194 Nomascus leucogenys ENSNLEG00000005194 I 0.841
Myf6 Mus musculus ENSMUSG00000035923 D 0.841
ENSMPUG00000004945 Mustela putorius furo ENSMPUG00000004945 I 0.841
ENSOARG00000015145 Ovis aries ENSOARG00000015145 I 0.841
MYF6 Oryctolagus cuniculus ENSOCUG00000001457 I 0.841
myf6 Oryzias latipes ENSORLG00000016261 I 0.841
ENSONIG00000000007 Oreochromis niloticus ENSONIG00000000007 I 0.841
MYF6 Otolemur garnettii ENSOGAG00000001038 I 0.841
MYF6 Taeniopygia guttata ENSTGUG00000007751 I 0.841