fgenesh1_pg.scaffold_155000050 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh1_pg.scaffold_155000050 T048523_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.869 0.816
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.869 0.816
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_155000050 bHLH 388 436

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.273.42.1 Physcomitrella patens e_gw1.273.42.1 I 0.884
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.869
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.869
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.869
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.869
Ca_14223 Cicer arietinum Ca_14223 I 0.869
Ca_02662 Cicer arietinum Ca_02662 I 0.869
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.869
PK20089.1 Cannabis sativa PK20089.1 I 0.869
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.869
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.869
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.869
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.869
BHLH122 Arabidopsis thaliana AT1G51140 D 0.869
TCM_040564 Theobroma cacao TCM_040564 I 0.869
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.869
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.869
Bra018896 Brassica rapa Bra018896 I 0.869
Bra016886 Brassica rapa Bra016886 I 0.869
Bo4g191390 Brassica oleracea Bo4g191390 I 0.869
Bo6g024810 Brassica oleracea Bo6g024810 I 0.869
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.869
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.869
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.869
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.869
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.869
Si029614m.g Setaria italica Si029614m.g I 0.857
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.857
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.857
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.857
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.857
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.857
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.857
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.857
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.857
Eucgr.G03396 Eucalyptus grandis Eucgr.G03396 I 0.843