fgenesh1_pg.scaffold_37000071 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh1_pg.scaffold_37000071 T048530_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.882 0.922
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.882 0.922
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.882 0.922
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.882 0.922
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.861 0.765
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.861 0.765
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.861 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01757_2.00 bHLH 51 101

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_37000071 bHLH 328 378

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

Invalid Input OrderBy

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action