fgenesh2_pg.scaffold_226000031 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pg.scaffold_226000031 T048581_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nau
M03600_2.00
Drosophila melanogaster
DBAACAGCTGTYVH

DBRACAGCTGTTVH
SELEX
Nitta et al.(2015)
nau_1
0.884 0.923
nau
M03601_2.00
Drosophila melanogaster
NBRACAGCTGACRC

GYGTCAGCTGTYVN
SELEX
Nitta et al.(2015)
nau_2
0.884 0.923
nau
M03602_2.00
Drosophila melanogaster
RCGWCAGCTGWCGC

GCGWCAGCTGWCGY
SELEX
Nitta et al.(2015)
nau_3
0.884 0.923
nau
M05949_2.00
Drosophila melanogaster
CACCTGYY

RRCAGGTG
B1H
Zhu et al.(2011)
nau_da_SANGER_5_FBgn0002922
0.884 0.923
nau
M05950_2.00
Drosophila melanogaster
RACASCTGACGC

GCGTCAGSTGTY
B1H
Zhu et al.(2011)
nau_SANGER_5_FBgn0002922
0.884 0.923
Myf5
M09463_2.00
Mus musculus
NRRCAGCTGY

RCAGCTGYYN
Misc
Heinz et al.(2010)
GM-Myf5_GSE24852
0.846 0.865
MYF5
M09821_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYF5_Q6
0.846 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_226000031 bHLH 80 131

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL014322 Aedes aegypti AAEL014322 I 0.890
AAL11024 Xenopus tropicalis AAL11024 I 0.846
AALB008334 Anopheles albimanus AALB008334 I 0.890
Aan_R006542 Calypte anna Aan_R006542 I 0.866
AARA002094 Anopheles arabiensis AARA002094 I 0.890
AATE018889 Anopheles atroparvus AATE018889 I 0.890
ACHR010174 Anopheles christyi ACHR010174 I 0.890
ACOM034431 Anopheles coluzzii ACOM034431 I 0.890
ACUA006973 Anopheles culicifacies ACUA006973 I 0.890
ADAC002492 Anopheles darlingi ADAC002492 I 0.890
ADIR010448 Anopheles dirus ADIR010448 I 0.890
AEPI006062 Anopheles epiroticus AEPI006062 I 0.890
AFAF001067 Anopheles farauti AFAF001067 I 0.890
Afo_R014556 Aptenodytes forsteri Afo_R014556 I 0.866
AFUN011634 Anopheles funestus AFUN011634 I 0.890
Alligator_sinensis_CCG013129.1 Alligator sinensis Alligator_sinensis_CCG013129.1 I 0.866
AMAM006832 Anopheles maculatus AMAM006832 I 0.890
AMEM001613 Anopheles merus AMEM001613 I 0.890
AMIN003460 Anopheles minimus AMIN003460 I 0.890
AQUA000514 Anopheles quadriannulatus AQUA000514 I 0.890
ASTEI05690 Anopheles stephensi ASTEI05690 I 0.890
A_07871 Schistosoma haematobium A_07871 I 0.871
Brh_R006718 Buceros rhinoceros Brh_R006718 I 0.866
BXY_0489100 Bursaphelenchus xylophilus BXY_0489100 I 0.855
CapteG36721 Capitella teleta CapteG36721 I 0.884
Cflo_03885--XP_001120527.1_APIME Camponotus floridanus Cflo_03885--XP_001120527.1_APIME I 0.884
CGI_10007380 Crassostrea gigas CGI_10007380 I 0.884
CLEC002330 Cimex lectularius CLEC002330 I 0.884
CPIJ005345 Culex quinquefasciatus CPIJ005345 I 0.890
CpipJ_CPIJ005345 Culex pipiens CpipJ_CPIJ005345 I 0.890
csin100742 Clonorchis sinensis csin100742 I 0.871
D915_09890 Fasciola hepatica D915_09890 I 0.871
D917_06339 Trichinella nativa D917_06339 I 0.884
D918_04086 Trichuris suis D918_04086 I 0.884
ECANG7_02004 Echinococcus canadensis ECANG7_02004 I 0.850
ECPE_0001678601 Echinostoma caproni ECPE_0001678601 I 0.871
EFV52759 Trichinella spiralis EFV52759 I 0.884
EmuJ_001053100 Echinococcus multilocularis EmuJ_001053100 I 0.850
ENSAMEG00000013193 Ailuropoda melanoleuca ENSAMEG00000013193 I 0.846
ENSAPLG00000005673 Anas platyrhynchos ENSAPLG00000005673 I 0.866
ENSCSAG00000003889 Chlorocebus sabaeus ENSCSAG00000003889 I 0.846
ENSFALG00000000758 Ficedula albicollis ENSFALG00000000758 I 0.866
ENSGMOG00000011389 Gadus morhua ENSGMOG00000011389 I 0.846
ENSLACG00000014430 Latimeria chalumnae ENSLACG00000014430 I 0.866
ENSLOCG00000002164 Lepisosteus oculatus ENSLOCG00000002164 I 0.866
ENSMGAG00000007210 Meleagris gallopavo ENSMGAG00000007210 I 0.866
ENSMICG00000011211 Microcebus murinus ENSMICG00000011211 I 0.846
ENSMPUG00000004935 Mustela putorius furo ENSMPUG00000004935 I 0.846
ENSNLEG00000005207 Nomascus leucogenys ENSNLEG00000005207 I 0.846
ENSOARG00000015159 Ovis aries ENSOARG00000015159 I 0.846
ENSP00000228644 Macaca fascicularis ENSP00000228644 I 0.846
ENSPANG00000020394 Papio anubis ENSPANG00000020394 I 0.846
ENSPPYG00000004800 Pongo abelii ENSPPYG00000004800 I 0.846
ENSSTOG00000015810 Ictidomys tridecemlineatus ENSSTOG00000015810 I 0.846
ENSTSYG00000003282 Tarsius syrichta ENSTSYG00000003282 I 0.846
fgenesh2_pg.scaffold_226000032 Branchiostoma floridae fgenesh2_pg.scaffold_226000032 I 0.914
fgenesh2_pg.scaffold_29000123 Branchiostoma floridae fgenesh2_pg.scaffold_29000123 I 0.914
GA10192 Drosophila pseudoobscura FBgn0070251 I 0.884
GB55306 Apis mellifera GB55306 I 0.884
GD18361 Drosophila simulans FBgn0189889 I 0.884
GE23932 Drosophila yakuba FBgn0241076 I 0.884
GF18746 Drosophila ananassae FBgn0095763 I 0.884
Gfo_R009107 Geospiza fortis Gfo_R009107 I 0.866
GG12413 Drosophila erecta FBgn0104701 I 0.884
GH13904 Drosophila grimshawi FBgn0121380 I 0.884
GI24830 Drosophila mojavensis FBgn0147551 I 0.884
GJ24474 Drosophila virilis FBgn0211554 I 0.884
GK22777 Drosophila willistoni FBgn0224749 I 0.884
GL13832 Drosophila persimilis FBgn0151437 I 0.884
GM23547 Drosophila sechellia FBgn0178413 I 0.884
HmN_000553800 Hymenolepis microstoma HmN_000553800 I 0.850
HNAJ_0001324201 Hymenolepis nana HNAJ_0001324201 I 0.850
Hsal_05065--XP_001120527.1_APIME Harpegnathos saltator Hsal_05065--XP_001120527.1_APIME I 0.884
LCUP007809 Lucilia cuprina LCUP007809 I 0.884
LDEC009949 Leptinotarsa decemlineata LDEC009949 I 0.863
LLOJ004446 Lutzomyia longipalpis LLOJ004446 I 0.914
LotgiG99982 Lottia gigantea LotgiG99982 I 0.849
MCOS_0000168001 Mesocestoides corti MCOS_0000168001 I 0.850
MYF5 Cavia porcellus ENSCPOG00000007766 I 0.846
Myf5 Dipodomys ordii ENSDORG00000015437 I 0.846
Myf5 Mus musculus ENSMUSG00000000435 D 0.846
MYF5 Oryctolagus cuniculus ENSOCUG00000025477 I 0.846
MYF5 Ochotona princeps ENSOPRG00000009007 I 0.846
myf5 Xenopus tropicalis XB-GENE-493550 I 0.846
MYF5 Vicugna pacos ENSVPAG00000001927 I 0.846
MYF5 Tursiops truncatus ENSTTRG00000014691 I 0.846
MYF5 Myotis lucifugus ENSMLUG00000004943 I 0.846
MYF5 Loxodonta africana ENSLAFG00000016473 I 0.846
MYF5 Gorilla gorilla ENSGGOG00000004366 I 0.846
MYF5 Homo sapiens ENSG00000111049 D 0.846
MYF5 Felis catus ENSFCAG00000015011 I 0.846
MYF5 Echinops telfairi ENSETEG00000011255 I 0.846
MYF5 Erinaceus europaeus ENSEEUG00000011612 I 0.846
MYF5 Dasypus novemcinctus ENSDNOG00000034747 I 0.846
MYF5 Choloepus hoffmanni ENSCHOG00000008319 I 0.846
MYF5 Canis familiaris ENSCAFG00000005808 I 0.846
MYF5 Callithrix jacchus ENSCJAG00000019340 I 0.846
MYF5 Equus caballus ENSECAG00000020047 I 0.846
MYF5 Tupaia belangeri ENSTBEG00000008363 I 0.846
MYF5 Macaca mulatta ENSMMUG00000011669 I 0.846
MYF5 Pan troglodytes ENSPTRG00000005261 I 0.846
MYF5 Pteropus vampyrus ENSPVAG00000003336 I 0.846
Myf5 Rattus norvegicus ENSRNOG00000004768 I 0.846
MYF5 Sorex araneus ENSSARG00000008217 I 0.846
MYF5 Sus scrofa ENSSSCG00000000937 I 0.846
MYF5 Bos taurus ENSBTAG00000026972 I 0.846
MYF5 Procavia capensis ENSPCAG00000001722 I 0.846
myf5.L Xenopus laevis XB-GENE-866267 I 0.846
myod1 Takifugu rubripes ENSTRUG00000016609 I 0.866
myod1 Danio rerio ENSDARG00000030110 I 0.846
MYOD1 Taeniopygia guttata ENSTGUG00000008814 I 0.866
myod1 Xenopus tropicalis XB-GENE-1017498 I 0.866
MYOD1 Gallus gallus ENSGALG00000006216 I 0.866
myod1.S Xenopus laevis XB-GENE-1017506 I 0.866
Myotis_brandtii_MYF5_10034131 Myotis brandtii Myotis_brandtii_MYF5_10034131 I 0.846
nau Drosophila melanogaster FBgn0002922 D 0.884
nRc.2.0.1.g24248 Romanomermis culicivorax nRc.2.0.1.g24248 I 0.884
NV10294 Nasonia vitripennis NV10294 I 0.884
Ocbimv22002759m.g Octopus bimaculoides Ocbimv22002759m.g I 0.884
Ogr16343 Ophisaurus gracilis Ogr16343 I 0.866
PHUM424120 Pediculus humanus PHUM424120 I 0.860
Pvit_01710 Pogona vitticeps Pvit_01710 I 0.866
RPRC009735 Rhodnius prolixus RPRC009735 I 0.884
Sakowv30008488m.g Saccoglossus kowalevskii Sakowv30008488m.g I 0.860
SBAD_0001285401 Soboliphyme baturini SBAD_0001285401 I 0.884
Sjc_0011830 Schistosoma japonicum Sjc_0011830 I 0.871
Smp_167400 Schistosoma mansoni Smp_167400 I 0.871
SMU15001149 Schmidtea mediterranea SMU15001149 I 0.871
SPER_0001779001 Spirometra erinaceieuropaei SPER_0001779001 I 0.850
SPER_0002215301 Spirometra erinaceieuropaei SPER_0002215301 I 0.850
SPU_021119 Strongylocentrotus purpuratus SPU_021119 I 0.884
SSLN_0000613901 Schistocephalus solidus SSLN_0000613901 I 0.850
T265_10140 Opisthorchis viverrini T265_10140 I 0.871
TASK_0000583801 Taenia asiatica TASK_0000583801 I 0.850
TC015855 Tribolium castaneum TC015855 I 0.863
TMUE_s0045001800 Trichuris muris TMUE_s0045001800 I 0.884
TRE_0000306101 Trichobilharzia regenti TRE_0000306101 I 0.871
TsM_000079400 Taenia solium TsM_000079400 I 0.850
TTRE_0000002701 Trichuris trichiura TTRE_0000002701 I 0.884
YQE_11476 Dendroctonus ponderosae YQE_11476 I 0.863