fgenesh2_pg.scaffold_279000045 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pg.scaffold_279000045 T048585_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arntl
M01751_2.00
Mus musculus
NCACGTGAYN

NRTCACGTGN
PBM
Weirauch et al.(2014)
pTH5064
0.879 0.796
ARNTL
M02787_2.00
Homo sapiens
GTCACGTGAC

GTCACGTGAC
SELEX
Jolma et al.(2013)
ARNTL_1
0.879 0.796
ARNTL
M04124_2.00
Homo sapiens
RDCACGTGHN

NDCACGTGHY
SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX
0.879 0.796
ARNTL
M08725_2.00
Homo sapiens
NVDCACGTGBN

NVCACGTGHBN
Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A
0.879 0.796
Arntl
M08776_2.00
Mus musculus
VCACGTGMN

NKCACGTGB
Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A
0.879 0.796
Arntl
M09478_2.00
Mus musculus
CACGTGNN

NNCACGTG
Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860
0.879 0.796
Arntl
M09889_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BMAL1_01
0.879 0.796
ARNTL
M09841_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BMAL1_Q6
0.879 0.796
ARNTL
M04125_2.00
Homo sapiens
NDCACRTGHY

RDCAYGTGHN
SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX
0.879 0.796
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_279000045 bHLH 89 142

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ocbimv22023737m.g Octopus bimaculoides Ocbimv22023737m.g I 0.914
fgenesh2_pg.scaffold_792000016 Branchiostoma floridae fgenesh2_pg.scaffold_792000016 I 0.914
NEMVEDRAFT_v1g132249 Nematostella vectensis NEMVEDRAFT_v1g132249 I 0.894
NEMVEDRAFT_v1g224692 Nematostella vectensis NEMVEDRAFT_v1g224692 I 0.894
CGI_10025278 Crassostrea gigas CGI_10025278 I 0.892
ENSAMXG00000011758 Astyanax mexicanus ENSAMXG00000011758 I 0.881
ENSTGUG00000014839 Taeniopygia guttata ENSTGUG00000014839 I 0.879
ARNTL Tupaia belangeri ENSTBEG00000017387 I 0.879
ENSTGUG00000015954 Taeniopygia guttata ENSTGUG00000015954 I 0.879
ENSSTOG00000022144 Ictidomys tridecemlineatus ENSSTOG00000022144 I 0.879
ENSTSYG00000000577 Tarsius syrichta ENSTSYG00000000577 I 0.879
arntl1a Takifugu rubripes ENSTRUG00000008391 I 0.879
arntl1a Tetraodon nigroviridis ENSTNIG00000005490 I 0.879
ENSSHAG00000017357 Sarcophilus harrisii ENSSHAG00000017357 I 0.879
ENSPSIG00000013131 Pelodiscus sinensis ENSPSIG00000013131 I 0.879
ENSPPYG00000003473 Pongo abelii ENSPPYG00000003473 I 0.879
ENSPFOG00000008027 Poecilia formosa ENSPFOG00000008027 I 0.879
ARNTL Pan troglodytes ENSPTRG00000003376 I 0.879
ARNTL Pteropus vampyrus ENSPVAG00000006712 I 0.879
ARNTL Tursiops truncatus ENSTTRG00000013925 I 0.879
Arntl Rattus norvegicus ENSRNOG00000014448 D 0.879
ARNTL Sus scrofa ENSSSCG00000013397 I 0.879
ENSXMAG00000015619 Xiphophorus maculatus ENSXMAG00000015619 I 0.879
Myotis_brandtii_Arntl_10004678 Myotis brandtii Myotis_brandtii_Arntl_10004678 I 0.879
Gfo_R013617 Geospiza fortis Gfo_R013617 I 0.879
ENSP00000384517 Macaca fascicularis ENSP00000384517 I 0.879
Ogr18318 Ophisaurus gracilis Ogr18318 I 0.879
Pvit_10294 Pogona vitticeps Pvit_10294 I 0.879
arntl Xenopus tropicalis XB-GENE-495455 I 0.879
Tal_R003521 Tyto alba Tal_R003521 I 0.879
ENSBTAP00000017323-D1 Bos grunniens ENSBTAP00000017323-D1 I 0.879
Cmyd_10009262 Chelonia mydas Cmyd_10009262 I 0.879
arntl.S Xenopus laevis XB-GENE-495459 I 0.879
arntl.L Xenopus laevis XB-GENE-17342306 I 0.879
Aan_R006598 Calypte anna Aan_R006598 I 0.879
Afo_R014608 Aptenodytes forsteri Afo_R014608 I 0.879
Brh_R010633 Buceros rhinoceros Brh_R010633 I 0.879
Alligator_sinensis_CCG000787.1 Alligator sinensis Alligator_sinensis_CCG000787.1 I 0.879
ARNTL Vicugna pacos ENSVPAG00000005926 I 0.879
arntl1a Oryzias latipes ENSORLG00000019370 I 0.879
Arntl Dipodomys ordii ENSDORG00000015539 I 0.879
ARNTL Dasypus novemcinctus ENSDNOG00000003841 I 0.879
arntl1b Danio rerio ENSDARG00000035732 I 0.879
ARNTL Equus caballus ENSECAG00000012118 I 0.879
ENSFALG00000010646 Ficedula albicollis ENSFALG00000010646 I 0.879
arntl1a Gasterosteus aculeatus ENSGACG00000002445 I 0.879
ARNTL Homo sapiens ENSG00000133794 D 0.879
ARNTL Felis catus ENSFCAG00000010983 I 0.879
arntl1a Danio rerio ENSDARG00000006791 I 0.879
ENSCSAG00000004681 Chlorocebus sabaeus ENSCSAG00000004681 I 0.879
ENSAPLG00000003885 Anas platyrhynchos ENSAPLG00000003885 I 0.879
ENSAMEG00000002309 Ailuropoda melanoleuca ENSAMEG00000002309 I 0.879
ARNTL Anolis carolinensis ENSACAG00000004497 I 0.879
ARNTL Bos taurus ENSBTAG00000013029 I 0.879
ARNTL Canis familiaris ENSCAFG00000008095 I 0.879
ARNTL Cavia porcellus ENSCPOG00000008795 I 0.879
ARNTL Callithrix jacchus ENSCJAG00000010162 I 0.879
ARNTL Choloepus hoffmanni ENSCHOG00000000376 I 0.879
ARNTL Ochotona princeps ENSOPRG00000004853 I 0.879
ARNTL Gallus gallus ENSGALG00000005378 I 0.879
ENSNLEG00000017674 Nomascus leucogenys ENSNLEG00000017674 I 0.879
Arntl Mus musculus ENSMUSG00000055116 D 0.879
ENSMPUG00000013135 Mustela putorius furo ENSMPUG00000013135 I 0.879
ENSOANG00000000503 Ornithorhynchus anatinus ENSOANG00000000503 I 0.879
ENSOARG00000007809 Ovis aries ENSOARG00000007809 I 0.879
ENSONIG00000010970 Oreochromis niloticus ENSONIG00000010970 I 0.879
ARNTL Otolemur garnettii ENSOGAG00000000736 I 0.879
ARNTL Oryctolagus cuniculus ENSOCUG00000005940 I 0.879
ARNTL Gorilla gorilla ENSGGOG00000013211 I 0.879
ARNTL Monodelphis domestica ENSMODG00000008708 I 0.879
ARNTL Loxodonta africana ENSLAFG00000026673 I 0.879
ENSGMOG00000008906 Gadus morhua ENSGMOG00000008906 I 0.879
ARNTL Macaca mulatta ENSMMUG00000009690 I 0.879
ENSLOCG00000003999 Lepisosteus oculatus ENSLOCG00000003999 I 0.879
ARNTL Meleagris gallopavo ENSMGAG00000005349 I 0.879
ARNTL Myotis lucifugus ENSMLUG00000008503 I 0.879
ENSMICG00000001229 Microcebus murinus ENSMICG00000001229 I 0.879
ENSPMAG00000004171 Petromyzon marinus ENSPMAG00000004171 I 0.839
tetur08g07430 Tetranychus urticae tetur08g07430 N 0.838