gw1.68.283.1 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gw1.68.283.1 T048675_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH

DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.902 0.940
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN

NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.902 0.920
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC

GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.902 0.920
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB

VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.902 0.920
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW

WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.902 0.880
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY

RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.902 0.880
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC

GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.875 0.900
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN

NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.862 0.840
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB

VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.862 0.840
AT2G18300
M01702_2.00
Arabidopsis thaliana
NBCACGTGCNNN

NNNGCACGTGVN
PBM
Weirauch et al.(2014)
pTH7289
0.852 0.800
BEE2
M01708_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8094
0.852 0.800
AT2G18300
M06729_2.00
Arabidopsis thaliana
ACTGGT

ACCAGT
Dap-seq
OMalley et al.(2016)
bHLH64_col_a
0.852 0.800
PK05923.1
M01121_2.00
Cannabis sativa
NNNNNNN

NNNNNNN
PBM
Lambert et al.(2019)
pTH11368
0.842 0.760
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.68.283.1 bHLH 8 58

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

911 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_23458 Aegilops tauschii F775_23458 N 0.000
F775_43492 Aegilops tauschii F775_43492 N 0.000
F775_25020 Aegilops tauschii F775_25020 N 0.000
F775_02947 Aegilops tauschii F775_02947 N 0.000
AMTR_s00024p00250370 Amborella trichopoda AMTR_s00024p00250370 N 0.000
Aquca_041_00164 Aquilegia coerulea Aquca_041_00164 N 0.000
RSL1 Arabidopsis lyrata fgenesh2_kg.7__3192__AT5G37800.1 N 0.000
RHD6 Arabidopsis lyrata scaffold_201372.1 N 0.000
BHLH86 Arabidopsis thaliana AT5G37800 N 0.000
BHLH83 Arabidopsis thaliana AT1G66470 N 0.000
Bostr.9638s0100 Boechera stricta Bostr.9638s0100 N 0.000
Bostr.26959s0271 Boechera stricta Bostr.26959s0271 N 0.000
BRADI1G42440 Brachypodium distachyon BRADI1G42440 N 0.000
BRADI2G01000 Brachypodium distachyon BRADI2G01000 N 0.000
BRADI3G53060 Brachypodium distachyon BRADI3G53060 N 0.000
Bo00835s050 Brassica oleracea Bo00835s050 N 0.000
Bo6g101000 Brassica oleracea Bo6g101000 N 0.000
Bra019708 Brassica rapa Bra019708 N 0.000
Cagra.2629s0001 Capsella grandiflora Cagra.2629s0001 N 0.000
Cagra.8123s0001 Capsella grandiflora Cagra.8123s0001 N 0.000
Carubv10007389m.g Capsella rubella Carubv10007389m.g N 0.000
Carubv10021322m.g Capsella rubella Carubv10021322m.g N 0.000
evm.TU.contig_27490 Carica papaya evm.TU.contig_27490 N 0.000
Ca_16136 Cicer arietinum Ca_16136 N 0.000
Cla020067 Citrullus lanatus Cla020067 N 0.000
Ciclev10013420m.g Citrus clementina Ciclev10013420m.g N 0.000
orange1.1g038918m.g Citrus sinensis orange1.1g038918m.g N 0.000
Cucsa.006340 Cucumis sativus Cucsa.006340 N 0.000
Eucgr.F02831 Eucalyptus grandis Eucgr.F02831 N 0.000
Thhalv10018927m.g Eutrema salsugineum Thhalv10018927m.g N 0.000
Thhalv10028239m.g Eutrema salsugineum Thhalv10028239m.g N 0.000
gene17937-v1.0-hybrid Fragaria vesca gene17937-v1.0-hybrid N 0.000
GLYMA18G04420 Glycine max GLYMA18G04420 N 0.000
GLYMA14G07590 Glycine max GLYMA14G07590 N 0.000
GLYMA11G33840 Glycine max GLYMA11G33840 N 0.000
GLYMA02G41370 Glycine max GLYMA02G41370 N 0.000
Gorai.001G086800 Gossypium raimondii Gorai.001G086800 N 0.000
Gorai.004G064400 Gossypium raimondii Gorai.004G064400 N 0.000
MLOC_37511 Hordeum vulgare MLOC_37511 N 0.000
LPERR01G00690 Leersia perrieri LPERR01G00690 N 0.000
LPERR02G24230 Leersia perrieri LPERR02G24230 N 0.000
Lus10017634.g Linum usitatissimum Lus10017634.g N 0.000
Lus10033592.g Linum usitatissimum Lus10033592.g N 0.000
MDP0000435722 Malus domestica MDP0000435722 N 0.000
cassava10199.m1 Manihot esculenta cassava10199.m1 N 0.000
MTR_5g079500 Medicago truncatula MTR_5g079500 N 0.000
mgf025678m Mimulus guttatus mgf025678m N 0.000
GSMUA_Achr6G09370_001 Musa acuminata GSMUA_Achr6G09370_001 N 0.000
GSMUA_Achr3G01250_001 Musa acuminata GSMUA_Achr3G01250_001 N 0.000
GSMUA_Achr2G22860_001 Musa acuminata GSMUA_Achr2G22860_001 N 0.000
GSMUA_Achr10G20230_001 Musa acuminata GSMUA_Achr10G20230_001 N 0.000
OBART02G29800 Oryza barthii OBART02G29800 N 0.000
OBART01G00850 Oryza barthii OBART01G00850 N 0.000
OB02G36990 Oryza brachyantha OB02G36990 N 0.000
OB01G10850 Oryza brachyantha OB01G10850 N 0.000
ORGLA01G0007400 Oryza glaberrima ORGLA01G0007400 N 0.000
ORGLA02G0253300 Oryza glaberrima ORGLA02G0253300 N 0.000
OGLUM02G30450 Oryza glumaepatula OGLUM02G30450 N 0.000
OGLUM01G00830 Oryza glumaepatula OGLUM01G00830 N 0.000
BGIOSGA008903 Oryza indica BGIOSGA008903 N 0.000
BGIOSGA002533 Oryza indica BGIOSGA002533 N 0.000
OLONG_010619 Oryza longistaminata OLONG_010619 N 0.000
OMERI01G00290 Oryza meridionalis OMERI01G00290 N 0.000
OMERI02G28660 Oryza meridionalis OMERI02G28660 N 0.000
ONIVA02G32560 Oryza nivara ONIVA02G32560 N 0.000
ONIVA01G00780 Oryza nivara ONIVA01G00780 N 0.000
OPUNC02G27370 Oryza punctata OPUNC02G27370 N 0.000
OPUNC01G00700 Oryza punctata OPUNC01G00700 N 0.000
ORUFI02G31420 Oryza rufipogon ORUFI02G31420 N 0.000
ORUFI01G00830 Oryza rufipogon ORUFI01G00830 N 0.000
OS02G0710300 Oryza sativa OS02G0710300 N 0.000
OS01G0111500 Oryza sativa OS01G0111500 N 0.000
Pavir.Aa00611 Panicum virgatum Pavir.Aa00611 N 0.000
Pavir.Db01008 Panicum virgatum Pavir.Db01008 N 0.000
Pavir.Eb00817 Panicum virgatum Pavir.Eb00817 N 0.000
Pavir.J04215 Panicum virgatum Pavir.J04215 N 0.000
Pavir.J20533 Panicum virgatum Pavir.J20533 N 0.000
estExt_fgenesh1_pg.C_1470079 Physcomitrella patens estExt_fgenesh1_pg.C_1470079 N 0.000
POPTR_0005s14360 Populus trichocarpa POPTR_0005s14360 N 0.000
POPTR_0004s08770 Populus trichocarpa POPTR_0004s08770 N 0.000
Pm014359 Prunus mume Pm014359 N 0.000
PRUPE_ppa025775mg Prunus persica PRUPE_ppa025775mg N 0.000
28609.m000209 Ricinus communis 28609.m000209 N 0.000
SapurV1A.0230s0340 Salix purpurea SapurV1A.0230s0340 N 0.000
SapurV1A.0102s0280 Salix purpurea SapurV1A.0102s0280 N 0.000
SELMODRAFT_409967 Selaginella moellendorffii SELMODRAFT_409967 N 0.000
SELMODRAFT_413232 Selaginella moellendorffii SELMODRAFT_413232 N 0.000
SELMODRAFT_414414 Selaginella moellendorffii SELMODRAFT_414414 N 0.000
SELMODRAFT_426794 Selaginella moellendorffii SELMODRAFT_426794 N 0.000
Si004720m.g Setaria italica Si004720m.g N 0.000
Si019575m.g Setaria italica Si019575m.g N 0.000
Solyc02g091440.1 Solanum lycopersicum Solyc02g091440.1 N 0.000
PGSC0003DMG400030650 Solanum tuberosum PGSC0003DMG400030650 N 0.000
Sb03g008290 Sorghum bicolor Sb03g008290 N 0.000
Sb04g030230 Sorghum bicolor Sb04g030230 N 0.000
TCM_019210 Theobroma cacao TCM_019210 N 0.000
TRAES3BF060500180CFD_g Triticum aestivum TRAES3BF060500180CFD_g N 0.000
Traes_6BL_A964BE52B Triticum aestivum Traes_6BL_A964BE52B N 0.000
Traes_6DL_3DCFAB31F Triticum aestivum Traes_6DL_3DCFAB31F N 0.000
Traes_6BL_9B25E6A10 Triticum aestivum Traes_6BL_9B25E6A10 N 0.000
Traes_7DS_4053B6E88 Triticum aestivum Traes_7DS_4053B6E88 N 0.000
Traes_3AS_0D78930B4 Triticum aestivum Traes_3AS_0D78930B4 N 0.000
Traes_7BS_A0A8B25DF Triticum aestivum Traes_7BS_A0A8B25DF N 0.000
TRIUR3_27166 Triticum urartu TRIUR3_27166 N 0.000
TRIUR3_14379 Triticum urartu TRIUR3_14379 N 0.000
TRIUR3_11692 Triticum urartu TRIUR3_11692 N 0.000
VIT_14s0006g01470 Vitis vinifera VIT_14s0006g01470 N 0.000
GRMZM2G066057 Zea mays GRMZM2G066057 N 0.000
AC216731.3_FG001 Zea mays AC216731.3_FG001 N 0.000