gw1.90.96.1 (Physcomitrella patens)

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gw1.90.96.1 T048678_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Arabidopsis thaliana Transfac license required
Transfac license required
Matys et al.(2006)
0.887 0.729
Arabidopsis thaliana Transfac license required
Transfac license required
Matys et al.(2006)
0.868 0.729
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.90.96.1 bHLH 2 49


Other bHLH family TFs
Other Physcomitrella patens TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
29631.m001025 Ricinus communis 29631.m001025 N 0.854
30131.m006993 Ricinus communis 30131.m006993 I 0.852
30147.m014419 Ricinus communis 30147.m014419 I 0.887
AMS Arabidopsis lyrata fgenesh2_kg.3__3272__AT2G16910.1 I 0.868
AMS Populus trichocarpa POPTR_0009s13860 I 0.868
AMS Arabidopsis thaliana AT2G16910 D 0.868
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.887
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.881
AMTR_s00096p00160080 Amborella trichopoda AMTR_s00096p00160080 I 0.866
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.911
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I 0.911
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.887
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.887
BGIOSGA007229 Oryza indica BGIOSGA007229 I 0.861
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.887
Bo00285s440 Brassica oleracea Bo00285s440 I 0.887
Bo3g091780 Brassica oleracea Bo3g091780 I 0.868
Bo5g016510 Brassica oleracea Bo5g016510 I 0.887
Bo7g016210 Brassica oleracea Bo7g016210 I 0.868
Bo7g083870 Brassica oleracea Bo7g083870 I 0.887
Bo8g065080 Brassica oleracea Bo8g065080 I 0.887
Bo9g008020 Brassica oleracea Bo9g008020 I 0.887
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.887
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.887
Bostr.18351s0148 Boechera stricta Bostr.18351s0148 I 0.868
Bra002004 Brassica rapa Bra002004 I 0.868
Bra013041 Brassica rapa Bra013041 I 0.868
Bra016749 Brassica rapa Bra016749 I 0.887
Bra019794 Brassica rapa Bra019794 I 0.887
Bra025226 Brassica rapa Bra025226 I 0.887
Bra032947 Brassica rapa Bra032947 I 0.887
Bra034246 Brassica rapa Bra034246 I 0.887
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.887
BRADI3G01901 Brachypodium distachyon BRADI3G01901 I 0.854
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.881
BRADI4G17460 Brachypodium distachyon BRADI4G17460 I 0.857
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.857
Cagra.10862s0002 Capsella grandiflora Cagra.10862s0002 I 0.868
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.887
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.857
Carubv10016240m.g Capsella rubella Carubv10016240m.g I 0.868
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.887
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.887
cassava2551.valid.m1 Manihot esculenta cassava2551.valid.m1 I 0.844
cassava2552.valid.m1 Manihot esculenta cassava2552.valid.m1 I 0.844
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.887
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I 0.852
Ca_01394 Cicer arietinum Ca_01394 I 0.887
Ca_05416 Cicer arietinum Ca_05416 I 0.868
Ca_23693 Cicer arietinum Ca_23693 I 0.868
Ca_23694 Cicer arietinum Ca_23694 I 0.868
Ca_23892 Cicer arietinum Ca_23892 I 0.876 Lotus japonicus I 0.887
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.887
Ciclev10030105m.g Citrus clementina Ciclev10030105m.g I 0.842
Cla002682 Citrullus lanatus Cla002682 I 0.887
Cla003283 Citrullus lanatus Cla003283 I 0.887
Cla016068 Citrullus lanatus Cla016068 I 0.891
Cla023112 Citrullus lanatus Cla023112 I 0.857
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.891
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.857
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.887
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.887
estExt_fgenesh1_pg.C_1240017 Physcomitrella patens estExt_fgenesh1_pg.C_1240017 I 0.914
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.891
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.887
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.887
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I 0.894
Eucgr.G01783 Eucalyptus grandis Eucgr.G01783 I 0.898
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.887
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.911
evm.TU.supercontig_20.95 Carica papaya evm.TU.supercontig_20.95 I 0.898
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.887
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.891
F775_14780 Aegilops tauschii F775_14780 I 0.887
F775_15875 Aegilops tauschii F775_15875 I 0.857
fgenesh1_pg.scaffold_1000274 Physcomitrella patens fgenesh1_pg.scaffold_1000274 I 0.894
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.887
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I 0.861
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.868
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.887
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.857
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.887
GLYMA10G42830 Glycine max GLYMA10G42830 I 0.868
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.857
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.887
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.881
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.857
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.887
GLYMA20G24170 Glycine max GLYMA20G24170 I 0.868
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.887
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.887
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.887
Gorai.008G036900 Gossypium raimondii Gorai.008G036900 I 0.854
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.861
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.887
GRMZM2G119823 Zea mays GRMZM2G119823 I 0.857
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.887
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.887
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.887
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.887
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I 0.861
GSMUA_Achr11G09640_001 Musa acuminata GSMUA_Achr11G09640_001 I 0.876
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.911
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.911
GSMUA_Achr3G00640_001 Musa acuminata GSMUA_Achr3G00640_001 N 0.851
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.887
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I 0.861
gw1.257.54.1 Physcomitrella patens gw1.257.54.1 I 0.863
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.887
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.887
LjSGA_106153.1 Lotus japonicus LjSGA_106153.1 I 0.868
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.887
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.887
Lus10030609.g Linum usitatissimum Lus10030609.g N 0.854
Lus10032542.g Linum usitatissimum Lus10032542.g I 0.857
Lus10043199.g Linum usitatissimum Lus10043199.g I 0.857
MDP0000219146 Malus domestica MDP0000219146 I 0.863
MDP0000243628 Malus domestica MDP0000243628 I 0.849
MDP0000247912 Malus domestica MDP0000247912 I 0.887
MDP0000304669 Malus domestica MDP0000304669 I 0.887
MDP0000405748 Malus domestica MDP0000405748 I 0.868
MDP0000662999 Malus domestica MDP0000662999 I 0.887
MDP0000790939 Malus domestica MDP0000790939 N 0.850
mgf012194m Mimulus guttatus mgf012194m I 0.887
mgf015974m Mimulus guttatus mgf015974m I 0.887
mgf016462m Mimulus guttatus mgf016462m I 0.887
mgf018455m Mimulus guttatus mgf018455m I 0.844
mgf019723m Mimulus guttatus mgf019723m I 0.861
mgf024029m Mimulus guttatus mgf024029m I 0.861
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.887
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.881
MLOC_56814 Hordeum vulgare MLOC_56814 I 0.846
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.887
MTR_1g112680 Medicago truncatula MTR_1g112680 I 0.868
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.887
MTR_7g083900 Medicago truncatula MTR_7g083900 I 0.876
OBART01G42600 Oryza barthii OBART01G42600 I 0.887
OBART02G01550 Oryza barthii OBART02G01550 I 0.861
OBART04G06800 Oryza barthii OBART04G06800 N 0.856
OBART11G15260 Oryza barthii OBART11G15260 I 0.887
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.887
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I 0.861
OGLUM04G06590 Oryza glumaepatula OGLUM04G06590 N 0.856
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.887
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.887
OMERI02G00890 Oryza meridionalis OMERI02G00890 I 0.861
OMERI03G04040 Oryza meridionalis OMERI03G04040 N 0.856
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.887
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.887
ONIVA02G01430 Oryza nivara ONIVA02G01430 I 0.861
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.887
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.887
OPUNC02G01010 Oryza punctata OPUNC02G01010 I 0.861
OPUNC04G05620 Oryza punctata OPUNC04G05620 N 0.856
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.887
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.887
orange1.1g045155m.g Citrus sinensis orange1.1g045155m.g I 0.842
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.887
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.887
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I 0.861
ORGLA04G0051300 Oryza glaberrima ORGLA04G0051300 N 0.856
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.887
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.887
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I 0.861
ORUFI04G07840 Oryza rufipogon ORUFI04G07840 N 0.856
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.887
OS01G0928000 Oryza sativa OS01G0928000 I 0.887
OS04G0300600 Oryza sativa OS04G0300600 N 0.856
OS11G0523700 Oryza sativa OS11G0523700 I 0.887
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.881
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.887
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.887
Pavir.Ha01426 Panicum virgatum Pavir.Ha01426 I 0.876
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.887
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.911
PGSC0003DMG400008195 Solanum tuberosum PGSC0003DMG400008195 I 0.854
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.911
PGSC0003DMG400017440 Solanum tuberosum PGSC0003DMG400017440 I 0.867
PGSC0003DMG401028788 Solanum tuberosum PGSC0003DMG401028788 I 0.857
PK03241.1 Cannabis sativa PK03241.1 I 0.878
PK06841.1 Cannabis sativa PK06841.1 I 0.887
PK06940.1 Cannabis sativa PK06940.1 I 0.887
Pm008898 Prunus mume Pm008898 I 0.867
Pm016093 Prunus mume Pm016093 I 0.887
Pm020879 Prunus mume Pm020879 I 0.848
Pm024587 Prunus mume Pm024587 I 0.887
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I 0.911
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.887
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.887
POPTR_0018s13830 Populus trichocarpa POPTR_0018s13830 I 0.898
POPTR_0018s13840 Populus trichocarpa POPTR_0018s13840 I 0.868
POPTR_0018s13850 Populus trichocarpa POPTR_0018s13850 I 0.874
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.887
PRUPE_ppa010972mg Prunus persica PRUPE_ppa010972mg I 0.867
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.887
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I 0.848
SapurV1A.0001s2820 Salix purpurea SapurV1A.0001s2820 I 0.868
SapurV1A.0140s0240 Salix purpurea SapurV1A.0140s0240 I 0.874
SapurV1A.0140s0250 Salix purpurea SapurV1A.0140s0250 I 0.898
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.868
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.887
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.887
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.887
SapurV1A.3355s0010 Salix purpurea SapurV1A.3355s0010 I 0.874
SapurV1A.3355s0020 Salix purpurea SapurV1A.3355s0020 I 0.898
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.887
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.881
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.887
SCRM Arabidopsis thaliana AT3G26744 D 0.887
SCRM2 Arabidopsis lyrata Al_scaffold_0001_1326 I 0.861
SCRM2 Arabidopsis thaliana AT1G12860 I 0.887
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.887
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.887
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.891
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.891
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.891
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.891
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.887
SELMODRAFT_77288 Selaginella moellendorffii SELMODRAFT_77288 N 0.853
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.887
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.887
Si001874m.g Setaria italica Si001874m.g I 0.887
Si006199m.g Setaria italica Si006199m.g I 0.867
Si006500m.g Setaria italica Si006500m.g I 0.881
Si019518m.g Setaria italica Si019518m.g I 0.861
Si026212m.g Setaria italica Si026212m.g I 0.887
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.887
Solyc05g014590.2 Solanum lycopersicum Solyc05g014590.2 I 0.867
Solyc06g068870.2 Solanum lycopersicum Solyc06g068870.2 I 0.857
Solyc08g062780.1 Solanum lycopersicum Solyc08g062780.1 I 0.854
TCM_006602 Theobroma cacao TCM_006602 I 0.878
TCM_014741 Theobroma cacao TCM_014741 I 0.887
TCM_017336 Theobroma cacao TCM_017336 I 0.887
TDR Oryza sativa OS02G0120500 I 0.861
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.887
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.887
Thhalv10022620m.g Eutrema salsugineum Thhalv10022620m.g I 0.868
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.887
Traes_4DS_7B0E8D459 Triticum aestivum Traes_4DS_7B0E8D459 I 0.857
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.861
Traes_6AS_66A98BA55 Triticum aestivum Traes_6AS_66A98BA55 I 0.857
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.887
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.887
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.887
TRIUR3_16046 Triticum urartu TRIUR3_16046 I 0.857
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.887
VIT_01s0127g00860 Vitis vinifera VIT_01s0127g00860 I 0.898
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.887
VIT_03s0038g02540 Vitis vinifera VIT_03s0038g02540 I 0.858
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.887
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.887